TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

 Next Top

Name 

Preview 

Matches 

List 

1_h_2_0.564
ACATTCCT
2 TEAD1_MA0090.1_J,  TEF_01_M01305_T
2_re_70_0.441
CATGTGGCA
0
3_re_44_0.447
CCTGGCACA
0
4_re_10_0.450
CTCTGTGCCC
0
5_re_53_0.451
GCAAGGTCAC
6 ERR2_01_M01589_T,  NR4A2_MA0160.1_J,  SF1_Q6_M00727_T,  DAX1_01_M01248_T,  SF1_Q6_01_M01132_T,  GTF3C5_2_H
6_re_72_0.452
AGCACGTGG
2 CMYC_01_M01145_T,  MYC::MAX_MA0059.1_J
7_re_24_0.453
CAGCACCTACC
0
8_re_38_0.453
ACACACATGC
0
9_e_150_0.544
TCTGGAATGCA
1 HNRPH3_9_H
10_e_20_0.543
CCGCGCGAG
0
11_re_17_0.458
CTTACTATGTGC
0
12_h_10_0.541
CCGCCGCCGCCG
5 ADF1_Q6_M00171_T,  ERF2_01_M01057_T,  ADF1_Q6_01_M00923_T,  SP1SP3_Q4_M01219_T,  KROX_Q6_M00982_T
13_re_36_0.459
ACACAGTGCCT
0
14_re_33_0.462
CACACGTGAG
0
15_re_12_0.463
ATGTATGTGC
0
16_e_60_0.537
AGCCGCGC
2 DAL81_01_M01690_T,  DAL81_MA0290.1_J
17_re_39_0.463
TACAGATGAGG
0
18_e_304_0.536
GCGGGAGAA
0
19_h_1_0.536
GAATGACTCAGC
18 GCN4_02_M01555_T,  GCN4_MA0303.1_J,  Gcn4_GR09_U,  AP1_01_M00517_T,  Jundm2_secondary_SCI09_U,  AP1_C_M00199_T,  AP1_Q6_M00174_T,  GCN4_01_M00038_T,  AP1_Q6_01_M00925_T,  FRA1_Q5_M01267_T
20_e_58_0.535
GACGCGCT
0
21_e_316_0.534
CGTTTTAAA
0
22_e_313_0.534
GGTTACCG
0
23_e_96_0.532
AACGTCACG
1 bZIP_CREB/G-box-like_subclass_MF0002.1_J
24_re_74_0.468
CACGTATCAT
1 so_MA0246.1_J
25_e_1_0.531
CGCGCGCCC
3 E2F3_primary_SCI09_U,  E2F2_primary_SCI09_U,  Zfp161_primary_SCI09_U
26_e_309_0.531
AAACCAGAC
0
27_e_270_0.531
AAAGAAACGA
0
28_re_55_0.469
CAGAGCTGGA
0
29_e_33_0.530
CGCGGACGC
0
30_h_7_0.530
CGGAAGCG
0
31_re_69_0.471
ACTGTGCTAC
0
32_h_15_0.528
GCGGAGTAAA
0
33_e_27_0.528
CGCGCAGGC
1 ZFP206_01_M01742_T
34_e_248_0.527
AACACGTTT
0
35_re_45_0.473
AACTGAGGC
0
36_e_112_0.525
GACACGGAA
0
37_re_66_0.476
CTGCTTCTCT
0
38_e_18_0.524
CCCGCGGAG
4 IME1_01_M01684_T,  IME1_MA0320.1_J,  PDR1_02_M01633_T,  PDR1_MA0352.1_J
39_h_24_0.521
GGGGGAAAAAAA
2 at_AC_acceptor_SA0001.1_J,  at_AC_acceptor_SA0002.1_J
40_re_76_0.479
ACACGTAGC
0
41_re_63_0.480
TGTATATAA
0
42_re_26_0.481
GAAGAGAGA
0
43_e_88_0.519
TCGCGTCAC
0
44_e_267_0.518
GACGGAGA
1 PDR8_01_M01613_T
45_e_246_0.518
GGAAATGCCA
2 STAT3_01_M00225_T,  TAF1A_8_H
46_e_290_0.517
GAGGAAACA
0
47_re_20_0.484
ATATATTAAA
0
48_e_229_0.513
ACCGTCTCT
0
49_e_314_0.513
AAACGTGCC
0
50_h_12_0.513
AAAGGCCGCT
0
51_h_6_0.513
AAGGCCTGGTTT
0
52_e_198_0.513
CGGGAAC
0
53_h_9_0.512
CGCCAGACAA
0
54_e_288_0.511
CAGACGGAC
0
55_e_226_0.511
GGCGTACAC
0
56_re_9_0.491
ATAAAATAT
0
57_h_25_0.509
GTTAACTGCCTC
0
58_h_19_0.506
GTTTCTGAAAGC
1 HNRPA1_7_H
59_e_297_0.505
CAGGGAAAA
0
60_e_240_0.502
AATGTCTGGA
0

Target Databases

 Previous Next Top

Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiCmbned3.meme 2921 52

Matches to Query: 1_h_2_0.564

 Previous Next Top

Summary 

Alignment 

Name TEAD1_MA0090.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.50949e-07
E-value 0.00102512
q-value 0.00102512
Overlap 8
Offset 1
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name TEF_01_M01305_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.50949e-07
E-value 0.00102512
q-value 0.00102512
Overlap 8
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 2_re_70_0.441

 Previous Next Top

Matches to Query: 3_re_44_0.447

 Previous Next Top

Matches to Query: 4_re_10_0.450

 Previous Next Top

Matches to Query: 5_re_53_0.451

 Previous Next Top

Summary 

Alignment 

Name ERR2_01_M01589_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.73778e-07
E-value 0.0013839
q-value 0.00275029
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name NR4A2_MA0160.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.6051e-06
E-value 0.00468849
q-value 0.00450391
Overlap 8
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SF1_Q6_M00727_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.85362e-06
E-value 0.00833542
q-value 0.00450391
Overlap 8
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name DAX1_01_M01248_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.10346e-06
E-value 0.0090652
q-value 0.00450391
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SF1_Q6_01_M01132_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.80389e-06
E-value 0.0198742
q-value 0.00708975
Overlap 9
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GTF3C5_2_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.32787e-06
E-value 0.0214047
q-value 0.00708975
Overlap 6
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 6_re_72_0.452

 Previous Next Top

Summary 

Alignment 

Name CMYC_01_M01145_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.82585e-06
E-value 0.0170173
q-value 0.032992
Overlap 9
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MYC::MAX_MA0059.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.1428e-05
E-value 0.0333813
q-value 0.032992
Overlap 9
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 7_re_24_0.453

 Previous Next Top

Matches to Query: 8_re_38_0.453

 Previous Next Top

Matches to Query: 9_e_150_0.544

 Previous Next Top

Summary 

Alignment 

Name HNRPH3_9_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.74495e-06
E-value 0.028465
q-value 0.05693
Overlap 6
Offset -1
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 10_e_20_0.543

 Previous Next Top

Matches to Query: 11_re_17_0.458

 Previous Next Top

Matches to Query: 12_h_10_0.541

 Previous Next Top

Summary 

Alignment 

Name ADF1_Q6_M00171_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.06822e-07
E-value 0.000604127
q-value 0.00114134
Overlap 12
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name ERF2_01_M01057_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.93293e-07
E-value 0.00114881
q-value 0.00114134
Overlap 7
Offset -4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ADF1_Q6_01_M00923_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.39417e-06
E-value 0.0128354
q-value 0.00850131
Overlap 12
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1SP3_Q4_M01219_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.96867e-06
E-value 0.0291185
q-value 0.0127478
Overlap 11
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name KROX_Q6_M00982_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.09818e-05
E-value 0.032078
q-value 0.0127478
Overlap 12
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 13_re_36_0.459

 Previous Next Top

Matches to Query: 14_re_33_0.462

 Previous Next Top

Matches to Query: 15_re_12_0.463

 Previous Next Top

Matches to Query: 16_e_60_0.537

 Previous Next Top

Summary 

Alignment 

Name DAL81_01_M01690_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.47196e-05
E-value 0.0429961
q-value 0.0429681
Overlap 8
Offset 3
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name DAL81_MA0290.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.47196e-05
E-value 0.0429961
q-value 0.0429681
Overlap 8
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 17_re_39_0.463

 Previous Next Top

Matches to Query: 18_e_304_0.536

 Previous Next Top

Matches to Query: 19_h_1_0.536

 Previous Next Top

Summary 

Alignment 

Name GCN4_02_M01555_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.25371e-09
E-value 3.6621e-06
q-value 1.86801e-06
Overlap 12
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name GCN4_MA0303.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.25371e-09
E-value 3.6621e-06
q-value 1.86801e-06
Overlap 12
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gcn4_GR09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.25371e-09
E-value 3.6621e-06
q-value 1.86801e-06
Overlap 12
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_01_M00517_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.31088e-09
E-value 3.82907e-06
q-value 1.86801e-06
Overlap 12
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Jundm2_secondary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.73618e-09
E-value 1.96764e-05
q-value 4.3411e-06
Overlap 12
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_C_M00199_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.27946e-08
E-value 3.73731e-05
q-value 7.42089e-06
Overlap 9
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q6_M00174_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.66621e-08
E-value 7.78801e-05
q-value 1.28867e-05
Overlap 11
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GCN4_01_M00038_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.67485e-07
E-value 0.000489225
q-value 6.4761e-05
Overlap 12
Offset 7
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q6_01_M00925_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.99316e-06
E-value 0.00582201
q-value 0.000633123
Overlap 9
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name FRA1_Q5_M01267_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.18318e-06
E-value 0.00637708
q-value 0.000633123
Overlap 8
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Fos_MA0099.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.18318e-06
E-value 0.00637708
q-value 0.000633123
Overlap 8
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q4_01_M00926_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.64372e-06
E-value 0.0106433
q-value 0.000918851
Overlap 8
Offset -3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name BACH2_01_M00490_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.47251e-06
E-value 0.0159852
q-value 0.00126962
Overlap 11
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GCN4_Q2_M01713_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.93731e-06
E-value 0.0202639
q-value 0.00142483
Overlap 11
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_MA0099.2_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.00152e-06
E-value 0.0204515
q-value 0.00142483
Overlap 7
Offset -3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name BACH1_01_M00495_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.12417e-06
E-value 0.0208097
q-value 0.00142483
Overlap 12
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q4_M00188_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.09489e-05
E-value 0.0319819
q-value 0.00204851
Overlap 11
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name NFE2_01_M00037_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.519e-05
E-value 0.0443701
q-value 0.00259124
Overlap 10
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 20_e_58_0.535

 Previous Next Top

Matches to Query: 21_e_316_0.534

 Previous Next Top

Matches to Query: 22_e_313_0.534

 Previous Next Top

Matches to Query: 23_e_96_0.532

 Previous Next Top

Summary 

Alignment 

Name bZIP_CREB/G-box-like_subclass_MF0002.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.00515e-05
E-value 0.0293605
q-value 0.0582585
Overlap 6
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 24_re_74_0.468

 Previous Next Top

Summary 

Alignment 

Name so_MA0246.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.01915e-06
E-value 0.00297693
q-value 0.00595387
Overlap 6
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 25_e_1_0.531

 Previous Next Top

Summary 

Alignment 

Name E2F3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.49547e-06
E-value 0.00728927
q-value 0.0127015
Overlap 9
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name E2F2_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.08855e-06
E-value 0.0177847
q-value 0.0127015
Overlap 9
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.50871e-06
E-value 0.0219329
q-value 0.0127015
Overlap 9
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 26_e_309_0.531

 Previous Next Top

Matches to Query: 27_e_270_0.531

 Previous Next Top

Matches to Query: 28_re_55_0.469

 Previous Next Top

Matches to Query: 29_e_33_0.530

 Previous Next Top

Matches to Query: 30_h_7_0.530

 Previous Next Top

Matches to Query: 31_re_69_0.471

 Previous Next Top

Matches to Query: 32_h_15_0.528

 Previous Next Top

Matches to Query: 33_e_27_0.528

 Previous Next Top

Summary 

Alignment 

Name ZFP206_01_M01742_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.01492e-05
E-value 0.0296459
q-value 0.0592918
Overlap 9
Offset 0
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 34_e_248_0.527

 Previous Next Top

Matches to Query: 35_re_45_0.473

 Previous Next Top

Matches to Query: 36_e_112_0.525

 Previous Next Top

Matches to Query: 37_re_66_0.476

 Previous Next Top

Matches to Query: 38_e_18_0.524

 Previous Next Top

Summary 

Alignment 

Name IME1_01_M01684_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.70788e-06
E-value 0.0137517
q-value 0.0189015
Overlap 8
Offset -1
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name IME1_MA0320.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.70152e-06
E-value 0.0195752
q-value 0.0189015
Overlap 8
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PDR1_02_M01633_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.91456e-06
E-value 0.0289604
q-value 0.0189015
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PDR1_MA0352.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.30107e-05
E-value 0.0380044
q-value 0.0189015
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 39_h_24_0.521

 Previous Next Top

Summary 

Alignment 

Name at_AC_acceptor_SA0001.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.96954e-06
E-value 0.023279
q-value 0.0349449
Overlap 12
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name at_AC_acceptor_SA0002.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.19633e-05
E-value 0.0349449
q-value 0.0349449
Overlap 12
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 40_re_76_0.479

 Previous Next Top

Matches to Query: 41_re_63_0.480

 Previous Next Top

Matches to Query: 42_re_26_0.481

 Previous Next Top

Matches to Query: 43_e_88_0.519

 Previous Next Top

Matches to Query: 44_e_267_0.518

 Previous Next Top

Summary 

Alignment 

Name PDR8_01_M01613_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.49815e-05
E-value 0.0437609
q-value 0.0875219
Overlap 7
Offset -1
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 45_e_246_0.518

 Previous Next Top

Summary 

Alignment 

Name STAT3_01_M00225_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.51098e-06
E-value 0.0190186
q-value 0.0375335
Overlap 10
Offset 11
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name TAF1A_8_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.41168e-05
E-value 0.0412351
q-value 0.0406892
Overlap 7
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 46_e_290_0.517

 Previous Next Top

Matches to Query: 47_re_20_0.484

 Previous Next Top

Matches to Query: 48_e_229_0.513

 Previous Next Top

Matches to Query: 49_e_314_0.513

 Previous Next Top

Matches to Query: 50_h_12_0.513

 Previous Next Top

Matches to Query: 51_h_6_0.513

 Previous Next Top

Matches to Query: 52_e_198_0.513

 Previous Next Top

Matches to Query: 53_h_9_0.512

 Previous Next Top

Matches to Query: 54_e_288_0.511

 Previous Next Top

Matches to Query: 55_e_226_0.511

 Previous Next Top

Matches to Query: 56_re_9_0.491

 Previous Next Top

Matches to Query: 57_h_25_0.509

 Previous Next Top

Matches to Query: 58_h_19_0.506

 Previous Next Top

Summary 

Alignment 

Name HNRPA1_7_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.39012e-05
E-value 0.0406055
q-value 0.0812111
Overlap 9
Offset -1
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 59_e_297_0.505

 Previous Next Top

Matches to Query: 60_e_240_0.502

 Previous Next Top
Previous Next Top
TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 154.103 seconds
show model parameters...

Explanation of TOMTOM Results

 Previous Top

The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.