TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

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Name 

Preview 

Matches 

List 

1_re_2_0.348
ACGCCTGTA
0
2_re_17_0.349
GGGTTTCACCATG
0
3_re_74_0.350
CTGGGCAACA
0
4_re_62_0.351
CTCACTGCACCC
1 Zbtb3_primary_SCI09_U
5_re_44_0.356
CCAGCCTGGC
0
6_re_102_0.360
CCTCCCAAAT
2 IK_Q5_M01169_T,  LYF1_01_M00141_T
7_re_106_0.365
CGGGTTCAA
0
8_re_54_0.369
CAGCACTTTG
0
9_re_95_0.375
GAGGTTGCA
0
10_re_84_0.380
GCTAACATGGT
0
11_re_171_0.384
AGGTGTGAG
2 TBX5_Q5_M01044_T,  TBR2_01_M01774_T
12_re_60_0.385
TAGTAGAGA
0
13_re_162_0.390
AGGAGAATC
0
14_re_226_0.393
GTGCTAGGA
0
15_h_1_0.606
AGCACAAAGGCA
7 SOX9_Q4_M01284_T,  Sox4_primary_SCI09_U,  SMAD1_01_M01590_T,  Sox4_CR09_U,  Sox11_primary_SCI09_U,  NANOG_02_M01247_T,  Sox12_secondary_SCI09_U
16_re_27_0.396
TACTCGGGA
0
17_re_135_0.396
ATGGTCTCG
0
18_re_150_0.397
ACGCCATTGC
0
19_h_11_0.594
GCTTTCTTTGAA
1 KIAA0907_6_H
20_re_191_0.407
CCTGGGTGA
0
21_h_2_0.590
CTAATTAGCG
105 OG2_02_M01441_T,  Og2x_3719.1_Cell08_U,  Lhx6_3432.1_Cell08_U,  LHX61_02_M01422_T,  NKX11_01_M01334_T,  Nkx1-1_3856.3_Cell08_U,  GSH2_01_M01326_T,  Gsh2_3990.2_Cell08_U,  Emx2_3420.1_Cell08_U,  RAX_01_M01389_T
22_re_87_0.411
ATCCACCCG
0
23_e_236_0.414
CGGTGTCAC
0
24_h_5_0.583
GCCTTTCAGAGA
0
25_re_268_0.421
TCATCGTCC
0
26_e_92_0.423
ACCCGGGT
0
27_h_20_0.574
CGGAGAGA
0
28_re_149_0.429
CCAAGTAGC
0
29_re_224_0.431
CAGGACCAG
0
30_e_384_0.432
GGGATTAG
2 PITX3_01_M01343_T,  Pitx3_3497.2_Cell08_U
31_re_254_0.433
ACCTCATC
0
32_e_254_0.437
AACACCGTG
0
33_re_237_0.437
TCCGGCCAC
3 NDT80_01_M01515_T,  NDT80_MA0343.1_J,  Ndt80_GR09_U
34_h_18_0.562
CTCTCGCGAA
0
35_re_193_0.560
CTCGGGGAA
0
36_re_233_0.441
GGAGACAGA
0
37_e_363_0.556
CCGTACAG
0
38_re_189_0.445
CACGTGCCAG
8 Arnt_MA0004.1_J,  CBF1_02_M01699_T,  Cbf1_GR09_U,  Mycn_MA0104.1_J,  CBF1_01_M01577_T,  MYC_Q2_M00799_T,  USF1_7_H,  CG1_Q6_M00440_T
39_e_324_0.554
TAACCCTT
1 Kr_MA0452.1_J
40_re_183_0.553
CCTCCTCCG
0
41_e_296_0.552
AAAACGCCT
0
42_e_253_0.549
ACAATGAGG
0
43_re_207_0.452
ACCGTGCCT
0
44_e_331_0.547
AACGTGAAA
0
45_e_233_0.456
CGGTAGGT
1 ATMYB15_01_M00969_T
46_e_135_0.543
AAACACGC
0
47_e_128_0.541
CCACATTCC
0
48_e_43_0.462
GGAGTCCCG
0
49_e_255_0.521
TTGTACGGA
1 SPL14_01_M01180_T
50_e_45_0.521
ACGCAGACG
0

Target Databases

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Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiCmbned3.meme 2921 134

Matches to Query: 1_re_2_0.348

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Matches to Query: 2_re_17_0.349

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Matches to Query: 3_re_74_0.350

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Matches to Query: 4_re_62_0.351

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Summary 

Alignment 

Name Zbtb3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.00524e-05
E-value 0.029363
q-value 0.0587259
Overlap 12
Offset 3
Orientation Normal
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Matches to Query: 5_re_44_0.356

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Matches to Query: 6_re_102_0.360

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Summary 

Alignment 

Name IK_Q5_M01169_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.10551e-07
E-value 0.00119922
q-value 0.00239316
Overlap 9
Offset 1
Orientation Reverse Complement
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Summary 

Alignment 

Name LYF1_01_M00141_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.18396e-06
E-value 0.00930036
q-value 0.0092799
Overlap 9
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 7_re_106_0.365

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Matches to Query: 8_re_54_0.369

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Matches to Query: 9_re_95_0.375

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Matches to Query: 10_re_84_0.380

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Matches to Query: 11_re_171_0.384

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Summary 

Alignment 

Name TBX5_Q5_M01044_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.1925e-08
E-value 0.000122463
q-value 0.000244892
Overlap 9
Offset 1
Orientation Reverse Complement
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Summary 

Alignment 

Name TBR2_01_M01774_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.00511e-05
E-value 0.0293592
q-value 0.0293552
Overlap 9
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 12_re_60_0.385

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Matches to Query: 13_re_162_0.390

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Matches to Query: 14_re_226_0.393

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Matches to Query: 15_h_1_0.606

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Summary 

Alignment 

Name SOX9_Q4_M01284_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.80832e-07
E-value 0.00111241
q-value 0.000855262
Overlap 11
Offset -1
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Sox4_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.01887e-07
E-value 0.00146601
q-value 0.000855262
Overlap 12
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SMAD1_01_M01590_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.04952e-07
E-value 0.00147497
q-value 0.000855262
Overlap 11
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox4_CR09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.88917e-07
E-value 0.00172023
q-value 0.000855262
Overlap 12
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox11_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.07987e-06
E-value 0.00315431
q-value 0.0012546
Overlap 12
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name NANOG_02_M01247_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.77242e-06
E-value 0.00517724
q-value 0.00171601
Overlap 12
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox12_secondary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.05344e-06
E-value 0.0118401
q-value 0.0033638
Overlap 12
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 16_re_27_0.396

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Matches to Query: 17_re_135_0.396

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Matches to Query: 18_re_150_0.397

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Matches to Query: 19_h_11_0.594

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Summary 

Alignment 

Name KIAA0907_6_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.39849e-05
E-value 0.0408498
q-value 0.0816997
Overlap 5
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 20_re_191_0.407

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Matches to Query: 21_h_2_0.590

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Summary 

Alignment 

Name OG2_02_M01441_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.7016e-10
E-value 1.37334e-06
q-value 1.24008e-06
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Og2x_3719.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.7016e-10
E-value 1.37334e-06
q-value 1.24008e-06
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx6_3432.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.42716e-09
E-value 1.29317e-05
q-value 7.78462e-06
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX61_02_M01422_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.51932e-09
E-value 1.90429e-05
q-value 8.59756e-06
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name NKX11_01_M01334_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.61367e-08
E-value 7.63452e-05
q-value 2.2979e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Nkx1-1_3856.3_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.61367e-08
E-value 7.63452e-05
q-value 2.2979e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GSH2_01_M01326_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.22115e-08
E-value 0.0001233
q-value 2.42684e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gsh2_3990.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.22115e-08
E-value 0.0001233
q-value 2.42684e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Emx2_3420.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.82418e-08
E-value 0.000140914
q-value 2.42684e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RAX_01_M01389_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.82418e-08
E-value 0.000140914
q-value 2.42684e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CHX10_01_M00437_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.31705e-08
E-value 0.000155311
q-value 2.42684e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EMX2_01_M01461_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.44075e-08
E-value 0.000188134
q-value 2.42684e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXD1_01_M01448_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.44075e-08
E-value 0.000188134
q-value 2.42684e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rax_3443.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.44075e-08
E-value 0.000188134
q-value 2.42684e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxd1_3448.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.50728e-08
E-value 0.000248498
q-value 2.9918e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ro_MA0241.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.53619e-07
E-value 0.00044872
q-value 3.4472e-05
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name IPF1_01_M01233_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.56675e-07
E-value 0.000457648
q-value 3.4472e-05
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EN2_01_M01455_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.84885e-07
E-value 0.00054005
q-value 3.4472e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name NKX12_01_M01427_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.84885e-07
E-value 0.00054005
q-value 3.4472e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PAX4_05_M01385_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.84885e-07
E-value 0.00054005
q-value 3.4472e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXA3_02_M01337_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.85578e-07
E-value 0.000542075
q-value 3.4472e-05
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa3_2783.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.85578e-07
E-value 0.000542075
q-value 3.4472e-05
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EVX2_01_M01386_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name En2_0952.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXB3_01_M01330_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxb3_1720.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LH2_01_M01325_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx2_0953.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Nkx1-2_3214.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Pax4_3989.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.35253e-07
E-value 0.000687175
q-value 3.4472e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CG9876_MA0184.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.72587e-07
E-value 0.000796227
q-value 3.59483e-05
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OdsH_MA0198.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.72587e-07
E-value 0.000796227
q-value 3.59483e-05
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OdsH_MA0455.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.72587e-07
E-value 0.000796227
q-value 3.59483e-05
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Evx2_2645.3_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.9692e-07
E-value 0.000867303
q-value 3.82022e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX4_01_M01421_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.71879e-07
E-value 0.00108626
q-value 4.35935e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX8_01_M01440_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.71879e-07
E-value 0.00108626
q-value 4.35935e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx4_1719.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.71879e-07
E-value 0.00108626
q-value 4.35935e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx8_2247.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.71879e-07
E-value 0.00108626
q-value 4.35935e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Isx_3445.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.04588e-07
E-value 0.0011818
q-value 4.44636e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Vax2_3500.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.04588e-07
E-value 0.0011818
q-value 4.44636e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ISX_01_M01331_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.99597e-07
E-value 0.00145932
q-value 4.88044e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name VAX2_01_M01327_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.99597e-07
E-value 0.00145932
q-value 4.88044e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Prrx2_3072.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.70956e-07
E-value 0.00166776
q-value 5.37833e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOX13_02_M01452_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.12904e-07
E-value 0.00179029
q-value 5.51479e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa5_3415.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.12904e-07
E-value 0.00179029
q-value 5.51479e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EVX1_01_M01475_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.0044e-07
E-value 0.00204599
q-value 5.51479e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Evx1_3952.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.0044e-07
E-value 0.00204599
q-value 5.51479e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBX2_01_M01382_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.0044e-07
E-value 0.00204599
q-value 5.51479e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gbx2_3110.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.0044e-07
E-value 0.00204599
q-value 5.51479e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name S8_02_M01376_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.0044e-07
E-value 0.00204599
q-value 5.51479e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name VAX1_01_M01397_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.47282e-07
E-value 0.00218281
q-value 5.55212e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Vax1_3499.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.47282e-07
E-value 0.00218281
q-value 5.55212e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name IPF1_03_M01235_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.2625e-07
E-value 0.00241348
q-value 6.00659e-05
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxd3_1742.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.05814e-07
E-value 0.00264588
q-value 6.20556e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name S8_01_M00099_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.05814e-07
E-value 0.00264588
q-value 6.20556e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SHOX2_01_M01415_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.03515e-06
E-value 0.00302367
q-value 6.91207e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Shox2_2641.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.03515e-06
E-value 0.00302367
q-value 6.91207e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXB5_01_M01319_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.09193e-06
E-value 0.00318952
q-value 7.11117e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXD3_01_M01338_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.09193e-06
E-value 0.00318952
q-value 7.11117e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXA1_01_M01487_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.30941e-06
E-value 0.00382479
q-value 8.22299e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxb5_3122.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.30941e-06
E-value 0.00382479
q-value 8.22299e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.32644e-06
E-value 0.00387454
q-value 8.23194e-05
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX61_01_M01314_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.49628e-06
E-value 0.00437064
q-value 8.57944e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PAX7_01_M01339_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.49628e-06
E-value 0.00437064
q-value 8.57944e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Pax7_3783.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.49628e-06
E-value 0.00437064
q-value 8.57944e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EN1_02_M01365_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.56246e-06
E-value 0.00456396
q-value 8.58563e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa1_3425.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.56246e-06
E-value 0.00456396
q-value 8.58563e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name IPF1_06_M01438_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.56246e-06
E-value 0.00456396
q-value 8.58563e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Ipf1_3815.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.56246e-06
E-value 0.00456396
q-value 8.58563e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ESX1_01_M01474_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.78538e-06
E-value 0.00521508
q-value 9.51322e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Esx1_3124.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.78538e-06
E-value 0.00521508
q-value 9.51322e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx6_2272.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.78538e-06
E-value 0.00521508
q-value 9.51322e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name En1_3123.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.85572e-06
E-value 0.00542056
q-value 9.59722e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXA2_01_M01402_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.85572e-06
E-value 0.00542056
q-value 9.59722e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa2_3079.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.85572e-06
E-value 0.00542056
q-value 9.59722e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lbx2_3869.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.12036e-06
E-value 0.00619357
q-value 0.000104534
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LBX2_01_M01401_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.50705e-06
E-value 0.0073231
q-value 0.000119144
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Dlx5_3419.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.03044e-06
E-value 0.00885191
q-value 0.000139008
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lim3_MA0195.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.38116e-06
E-value 0.00987636
q-value 0.000150922
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rx_MA0202.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.38116e-06
E-value 0.00987636
q-value 0.000150922
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rhox6_4251.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.04468e-06
E-value 0.0118145
q-value 0.000169335
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name DLX5_01_M01388_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.123e-06
E-value 0.0120433
q-value 0.000171255
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ap_MA0209.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.59447e-06
E-value 0.0134204
q-value 0.000189347
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PSX1_01_M01435_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.70889e-06
E-value 0.0137547
q-value 0.000192558
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PMX2A_01_M01444_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.53465e-06
E-value 0.0161667
q-value 0.000219518
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Phox2a_3947.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.53465e-06
E-value 0.0161667
q-value 0.000219518
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Pph13_MA0200.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.09771e-06
E-value 0.0178114
q-value 0.00023479
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name unpg_MA0251.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.09771e-06
E-value 0.0178114
q-value 0.00023479
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBX1_01_M01371_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.28684e-06
E-value 0.0212849
q-value 0.00026163
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Vsx1_MA0181.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.92772e-06
E-value 0.0231569
q-value 0.000271557
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name exex_MA0223.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.92772e-06
E-value 0.0231569
q-value 0.000271557
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name exex_MA0224.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.92772e-06
E-value 0.0231569
q-value 0.000271557
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gbx1_2883.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.3782e-06
E-value 0.0244727
q-value 0.000282846
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HB9_01_M01349_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.41817e-06
E-value 0.0245895
q-value 0.000282846
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hlxb9_3422.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.41817e-06
E-value 0.0245895
q-value 0.000282846
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name en_MA0220.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.01234e-05
E-value 0.0295705
q-value 0.000329644
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ind_MA0228.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.01234e-05
E-value 0.0295705
q-value 0.000329644
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MSX2_01_M01393_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.25322e-05
E-value 0.0366065
q-value 0.000390583
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Awh_MA0167.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.27353e-05
E-value 0.0371998
q-value 0.000390583
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name otp_MA0236.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.27353e-05
E-value 0.0371998
q-value 0.000390583
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Msx2_3449.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.42615e-05
E-value 0.041658
q-value 0.000429894
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CG18599_MA0177.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.58158e-05
E-value 0.0461981
q-value 0.000464216
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name E5_MA0189.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.58158e-05
E-value 0.0461981
q-value 0.000464216
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CART1_02_M01362_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.61922e-05
E-value 0.0472974
q-value 0.000464216
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Cart1_0997.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.61922e-05
E-value 0.0472974
q-value 0.000464216
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 22_re_87_0.411

 Previous Next Top

Matches to Query: 23_e_236_0.414

 Previous Next Top

Matches to Query: 24_h_5_0.583

 Previous Next Top

Matches to Query: 25_re_268_0.421

 Previous Next Top

Matches to Query: 26_e_92_0.423

 Previous Next Top

Matches to Query: 27_h_20_0.574

 Previous Next Top

Matches to Query: 28_re_149_0.429

 Previous Next Top

Matches to Query: 29_re_224_0.431

 Previous Next Top

Matches to Query: 30_e_384_0.432

 Previous Next Top

Summary 

Alignment 

Name PITX3_01_M01343_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.31557e-05
E-value 0.0384277
q-value 0.0382771
Overlap 8
Offset 3
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Pitx3_3497.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.31557e-05
E-value 0.0384277
q-value 0.0382771
Overlap 8
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 31_re_254_0.433

 Previous Next Top

Matches to Query: 32_e_254_0.437

 Previous Next Top

Matches to Query: 33_re_237_0.437

 Previous Next Top

Summary 

Alignment 

Name NDT80_01_M01515_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.33322e-05
E-value 0.0389432
q-value 0.0259621
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name NDT80_MA0343.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.33322e-05
E-value 0.0389432
q-value 0.0259621
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Ndt80_GR09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.33322e-05
E-value 0.0389432
q-value 0.0259621
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 34_h_18_0.562

 Previous Next Top

Matches to Query: 35_re_193_0.560

 Previous Next Top

Matches to Query: 36_re_233_0.441

 Previous Next Top

Matches to Query: 37_e_363_0.556

 Previous Next Top

Matches to Query: 38_re_189_0.445

 Previous Next Top

Summary 

Alignment 

Name Arnt_MA0004.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.72642e-06
E-value 0.00504288
q-value 0.00418243
Overlap 6
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name CBF1_02_M01699_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.72642e-06
E-value 0.00504288
q-value 0.00418243
Overlap 6
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name Cbf1_GR09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.41806e-06
E-value 0.0129051
q-value 0.00418243
Overlap 10
Offset 8
Orientation Reverse Complement
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Summary 

Alignment 

Name Mycn_MA0104.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.47622e-06
E-value 0.013075
q-value 0.00418243
Overlap 6
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name CBF1_01_M01577_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.87814e-06
E-value 0.014249
q-value 0.00418243
Overlap 10
Offset 8
Orientation Reverse Complement
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Summary 

Alignment 

Name MYC_Q2_M00799_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.65965e-06
E-value 0.0252948
q-value 0.00543368
Overlap 7
Offset 0
Orientation Normal
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Summary 

Alignment 

Name USF1_7_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.2577e-05
E-value 0.0367374
q-value 0.00603944
Overlap 6
Offset 0
Orientation Normal
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Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.42611e-05
E-value 0.0416566
q-value 0.00603944
Overlap 9
Offset 2
Orientation Normal
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Matches to Query: 39_e_324_0.554

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Summary 

Alignment 

Name Kr_MA0452.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.10893e-05
E-value 0.0323918
q-value 0.0647836
Overlap 8
Offset 0
Orientation Reverse Complement
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Matches to Query: 40_re_183_0.553

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Matches to Query: 41_e_296_0.552

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Matches to Query: 42_e_253_0.549

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Matches to Query: 43_re_207_0.452

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Matches to Query: 44_e_331_0.547

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Matches to Query: 45_e_233_0.456

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Summary 

Alignment 

Name ATMYB15_01_M00969_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.06544e-07
E-value 0.00235592
q-value 0.00471183
Overlap 8
Offset 3
Orientation Normal
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Matches to Query: 46_e_135_0.543

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Matches to Query: 47_e_128_0.541

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Matches to Query: 48_e_43_0.462

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Matches to Query: 49_e_255_0.521

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Summary 

Alignment 

Name SPL14_01_M01180_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.72984e-06
E-value 0.00797387
q-value 0.0159477
Overlap 7
Offset -1
Orientation Reverse Complement
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Matches to Query: 50_e_45_0.521

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TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 120.728 seconds
show model parameters...

Explanation of TOMTOM Results

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The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.