TOMTOM

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs | Target Databases | Matches | Program information | Explanation

Query Motifs

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Name	Preview	Matches	List
1_re_76_0.435	GTGCACACA	1	Zscan4_primary_SCI09_U
2_h_1_0.559	GACAGATAAG	15	Tal1::Gata1_MA0140.1_J, Gata1_MA0035.2_J, Gata6_primary_SCI09_U, GATA2_02_M00348_T, GATA1_04_M00128_T, GATA_Q6_M00789_T, GATA2_03_M00349_T, Gata3_primary_SCI09_U, GATA3_02_M00350_T, SIRT6_01_M01797_T
3_re_3_0.442	CACGTGGCCA	8	ABF1_02_M00400_T, GBF_Q2_M00441_T, PIF3_02_M00435_T, PIF3_01_M00434_T, CG1_Q6_M00440_T, EMBP1_Q2_M00366_T, GBP_Q6_M00182_T, Mycn_MA0104.2_J
4_re_63_0.442	CACGTGCTG	0
5_re_52_0.443	CCTGGCACA	0
6_re_47_0.444	TCACAGTGCCT	0
7_e_83_0.554	ACGGCGGGA	2	UGA3_MA0410.1_J, UGA3_01_M01622_T
8_h_21_0.554	CGTTTCCGGCCC	0
9_e_31_0.552	ACGCGGGA	0
10_e_76_0.552	CGGCTA	1	UME6_MA0412.1_J
11_h_16_0.551	CGCGCCGGCG	0
12_e_35_0.550	CTCGCGAGA	0
13_re_10_0.450	AGCTGTGTG	0
14_h_5_0.550	CGCTTCCGTT	7	GABPA_MA0062.1_J, NRF2_01_M00108_T, GABPALPHA_Q4_M01660_T, GABP_B_M00341_T, GADP_01_M01258_T, ETS_class_MF0001.1_J, RARG_9_H
15_re_6_0.450	CTCTGTGCCC	0
16_re_66_0.450	CAAGGTCAC	4	ERR2_01_M01589_T, NR4A2_MA0160.1_J, SF1_Q6_M00727_T, GTF3C5_2_H
17_e_43_0.547	CGCCTCGGG	0
18_e_10_0.547	GCGCCGGCCG	0
19_re_24_0.455	AGCACCTACA	0
20_re_74_0.455	CAGATGAGGA	0
21_h_28_0.545	GTCGAACGCTCT	0
22_re_56_0.456	CAGAGCTGGA	0
23_h_8_0.544	AGGAATGCGA	2	TEC1_MA0406.1_J, Bcl6b_primary_SCI09_U
24_e_0_0.544	CCCCCGCCCCGGC	22	SP4_Q5_M01273_T, SP1_Q6_M00196_T, SP1_Q2_01_M00933_T, SP1_Q6_01_M00931_T, SP1_Q4_01_M00932_T, SP1_02_M01303_T, SP1_MA0079.2_J, Zfp410_secondary_SCI09_U, GC-box_POL003.1_J, GC_01_M00255_T
25_e_53_0.542	CGGAGACCG	0
26_e_229_0.540	AAAGGAAAAC	1	HELIOSA_02_M01004_T
27_e_5_0.539	CGCGCGCTC	2	Rsc3_GR09_U, RSC3_01_M01551_T
28_e_164_0.539	ATAAAACGG	0
29_re_15_0.462	CTGTGTGGCTT	0
30_re_43_0.462	CACGTGGAG	0
31_e_64_0.538	ACCTCCGC	1	MIZF_MA0131.1_J
32_re_86_0.462	CCACGTAGA	1	O2_01_M00010_T
33_e_284_0.537	AATACGGA	0
34_re_51_0.466	AACTGAGGC	0
35_e_280_0.534	CGCATTAC	0
36_e_315_0.533	AAATAACGT	0
37_e_252_0.531	GAGATAAA	0
38_e_181_0.527	ACTCGCTTC	0
39_h_7_0.527	AGCGAAAATGGC	0
40_h_10_0.526	TCCTGCCTTAAC	1	HLCS_2_H
41_re_82_0.474	AACGTGTAT	0
42_e_294_0.525	GATAACACC	0
43_e_183_0.525	ATTTCCTGC	1	FEV_MA0156.1_J
44_e_42_0.524	CCTCCCGGGC	0
45_e_262_0.524	ATAAACAGC	0
46_re_62_0.481	AGCAGCAGC	0
47_e_87_0.518	GAAATACGC	0
48_e_38_0.516	GGAGGAGGAA	2	ANXA11_6_H, FPM315_01_M01587_T
49_e_313_0.515	ATTTTACAG	1	MRPL1_5_H
50_e_62_0.515	GCGAGGCTGGGG	0
51_e_322_0.513	TGGTTTACA	0
52_re_79_0.487	ACGTAAGTAT	0
53_e_320_0.511	AAACGTGGT	0
54_re_67_0.489	AATATATGC	0
55_re_11_0.494	ATATAAAATA	0
56_h_34_0.506	CTTTCAGC	0
57_h_33_0.504	AGGAATTCAGAG	0
58_h_3_0.502	GCTGACTCATCA	19	AP1_01_M00517_T, AP1_C_M00199_T, GCN4_02_M01555_T, GCN4_MA0303.1_J, Gcn4_GR09_U, Jundm2_secondary_SCI09_U, AP1_Q6_M00174_T, GCN4_01_M00038_T, FRA1_Q5_M01267_T, Fos_MA0099.1_J
59_h_12_0.502	ACCTACCCGAAT	0
60_h_23_0.502	GTCAGGCCTC	0

Target Databases

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Database	Number of Motifs	Motifs Matched
trnsfcJsprUnprobHpdiCmbned3.meme	2921	91

Matches to Query: 1_re_76_0.435

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Summary

Alignment

Name	Zscan4_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.40194e-05
E-value	0.0409507
q-value	0.0819014
Overlap	9
Offset	5
Orientation	Normal

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Matches to Query: 2_h_1_0.559

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Summary

Alignment

Name	Tal1::Gata1_MA0140.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.21505e-13
E-value	3.54917e-10
q-value	7.0754e-10
Overlap	10
Offset	8
Orientation	Normal

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Summary

Alignment

Name	Gata1_MA0035.2_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.62355e-08
E-value	0.000105844
q-value	0.000105502
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	Gata6_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.31764e-07
E-value	0.000676984
q-value	0.000383302
Overlap	10
Offset	2
Orientation	Normal

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Summary

Alignment

Name	GATA2_02_M00348_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.9199e-07
E-value	0.000852901
q-value	0.000383302
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	GATA1_04_M00128_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.29121e-07
E-value	0.000961363
q-value	0.000383302
Overlap	10
Offset	0
Orientation	Normal

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Summary

Alignment

Name	GATA_Q6_M00789_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.62577e-06
E-value	0.00474887
q-value	0.00157784
Overlap	7
Offset	-3
Orientation	Normal

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Summary

Alignment

Name	GATA2_03_M00349_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.35709e-06
E-value	0.00688505
q-value	0.0019608
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	Gata3_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	5.0422e-06
E-value	0.0147283
q-value	0.00344231
Overlap	10
Offset	4
Orientation	Normal

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Summary

Alignment

Name	GATA3_02_M00350_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	5.73296e-06
E-value	0.016746
q-value	0.00344231
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	SIRT6_01_M01797_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	5.91146e-06
E-value	0.0172674
q-value	0.00344231
Overlap	7
Offset	-3
Orientation	Normal

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Summary

Alignment

Name	Gata5_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.50457e-06
E-value	0.0189999
q-value	0.00344335
Overlap	10
Offset	2
Orientation	Normal

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Summary

Alignment

Name	GLN3_01_M01569_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.43762e-06
E-value	0.0246463
q-value	0.00377948
Overlap	10
Offset	3
Orientation	Reverse Complement

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Summary

Alignment

Name	Gln3_GR09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.43762e-06
E-value	0.0246463
q-value	0.00377948
Overlap	10
Offset	3
Orientation	Reverse Complement

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Summary

Alignment

Name	GATA1_06_M00347_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.46297e-05
E-value	0.0427333
q-value	0.00608502
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	TAL1_01_M01591_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.70637e-05
E-value	0.0498429
q-value	0.00662424
Overlap	9
Offset	-1
Orientation	Reverse Complement

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Matches to Query: 3_re_3_0.442

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Summary

Alignment

Name	ABF1_02_M00400_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.30954e-06
E-value	0.00382516
q-value	0.00553225
Overlap	10
Offset	10
Orientation	Normal

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Summary

Alignment

Name	GBF_Q2_M00441_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.96447e-06
E-value	0.0057382
q-value	0.00553225
Overlap	9
Offset	3
Orientation	Normal

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Summary

Alignment

Name	PIF3_02_M00435_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.70104e-06
E-value	0.0108107
q-value	0.00694848
Overlap	10
Offset	6
Orientation	Reverse Complement

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Summary

Alignment

Name	PIF3_01_M00434_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.46506e-06
E-value	0.0188844
q-value	0.00848187
Overlap	10
Offset	6
Orientation	Reverse Complement

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Summary

Alignment

Name	CG1_Q6_M00440_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	7.52964e-06
E-value	0.0219941
q-value	0.00848187
Overlap	9
Offset	2
Orientation	Normal

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Summary

Alignment

Name	EMBP1_Q2_M00366_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.02963e-05
E-value	0.0300755
q-value	0.0086276
Overlap	8
Offset	2
Orientation	Reverse Complement

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Summary

Alignment

Name	GBP_Q6_M00182_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.22681e-05
E-value	0.0358352
q-value	0.0086276
Overlap	9
Offset	3
Orientation	Normal

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Summary

Alignment

Name	Mycn_MA0104.2_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.61561e-05
E-value	0.0471919
q-value	0.0086276
Overlap	8
Offset	2
Orientation	Normal

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Matches to Query: 4_re_63_0.442

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Matches to Query: 5_re_52_0.443

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Matches to Query: 6_re_47_0.444

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Matches to Query: 7_e_83_0.554

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Summary

Alignment

Name	UGA3_MA0410.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.13793e-06
E-value	0.00916588
q-value	0.0183318
Overlap	8
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	UGA3_01_M01622_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.1548e-05
E-value	0.0337318
q-value	0.0337318
Overlap	7
Offset	-1
Orientation	Normal

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Matches to Query: 8_h_21_0.554

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Matches to Query: 9_e_31_0.552

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Matches to Query: 10_e_76_0.552

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Summary

Alignment

Name	UME6_MA0412.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.1125e-06
E-value	0.00324962
q-value	0.00649925
Overlap	6
Offset	4
Orientation	Normal

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Matches to Query: 11_h_16_0.551

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Matches to Query: 12_e_35_0.550

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Matches to Query: 13_re_10_0.450

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Matches to Query: 14_h_5_0.550

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Summary

Alignment

Name	GABPA_MA0062.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.90279e-06
E-value	0.00555806
q-value	0.00549993
Overlap	10
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	NRF2_01_M00108_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.90279e-06
E-value	0.00555806
q-value	0.00549993
Overlap	10
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	GABPALPHA_Q4_M01660_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	4.36128e-06
E-value	0.0127393
q-value	0.00672718
Overlap	6
Offset	-2
Orientation	Normal

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Summary

Alignment

Name	GABP_B_M00341_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	4.65476e-06
E-value	0.0135966
q-value	0.00672718
Overlap	10
Offset	2
Orientation	Reverse Complement

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Summary

Alignment

Name	GADP_01_M01258_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.05018e-05
E-value	0.0306759
q-value	0.010409
Overlap	10
Offset	0
Orientation	Normal

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Summary

Alignment

Name	ETS_class_MF0001.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.08035e-05
E-value	0.0315571
q-value	0.010409
Overlap	8
Offset	-2
Orientation	Reverse Complement

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Summary

Alignment

Name	RARG_9_H
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.59653e-05
E-value	0.0466346
q-value	0.0131848
Overlap	6
Offset	-2
Orientation	Reverse Complement

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Matches to Query: 15_re_6_0.450

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Matches to Query: 16_re_66_0.450

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Summary

Alignment

Name	ERR2_01_M01589_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.03602e-07
E-value	0.00176312
q-value	0.00236863
Overlap	9
Offset	1
Orientation	Normal

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Summary

Alignment

Name	NR4A2_MA0160.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.16484e-07
E-value	0.00238495
q-value	0.00236863
Overlap	8
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	SF1_Q6_M00727_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.64068e-06
E-value	0.00479242
q-value	0.00317308
Overlap	8
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	GTF3C5_2_H
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.82574e-06
E-value	0.02578
q-value	0.0128018
Overlap	6
Offset	-3
Orientation	Reverse Complement

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Matches to Query: 17_e_43_0.547

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Matches to Query: 18_e_10_0.547

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Matches to Query: 19_re_24_0.455

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Matches to Query: 20_re_74_0.455

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Matches to Query: 21_h_28_0.545

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Matches to Query: 22_re_56_0.456

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Matches to Query: 23_h_8_0.544

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Summary

Alignment

Name	TEC1_MA0406.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.46063e-06
E-value	0.00426649
q-value	0.00853299
Overlap	8
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	Bcl6b_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.60922e-05
E-value	0.0470053
q-value	0.036067
Overlap	9
Offset	7
Orientation	Normal

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Matches to Query: 24_e_0_0.544

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Summary

Alignment

Name	SP4_Q5_M01273_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.25034e-10
E-value	9.49424e-07
q-value	1.87246e-06
Overlap	11
Offset	0
Orientation	Normal

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Summary

Alignment

Name	SP1_Q6_M00196_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.15246e-09
E-value	1.79713e-05
q-value	1.04408e-05
Overlap	12
Offset	1
Orientation	Reverse Complement

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Summary

Alignment

Name	SP1_Q2_01_M00933_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	7.24957e-09
E-value	2.1176e-05
q-value	1.04408e-05
Overlap	10
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	SP1_Q6_01_M00931_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	7.24957e-09
E-value	2.1176e-05
q-value	1.04408e-05
Overlap	10
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	SP1_Q4_01_M00932_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.15663e-08
E-value	3.37851e-05
q-value	1.33262e-05
Overlap	12
Offset	1
Orientation	Reverse Complement

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Summary

Alignment

Name	SP1_02_M01303_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.43301e-08
E-value	0.000100278
q-value	3.29615e-05
Overlap	10
Offset	1
Orientation	Reverse Complement

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Summary

Alignment

Name	SP1_MA0079.2_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.49426e-07
E-value	0.000436473
q-value	0.000122973
Overlap	10
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	Zfp410_secondary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.46291e-07
E-value	0.00188782
q-value	0.000465394
Overlap	13
Offset	2
Orientation	Normal

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Summary

Alignment

Name	GC-box_POL003.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.61737e-07
E-value	0.00251713
q-value	0.00049643
Overlap	12
Offset	2
Orientation	Reverse Complement

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Summary

Alignment

Name	GC_01_M00255_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.61737e-07
E-value	0.00251713
q-value	0.00049643
Overlap	12
Offset	2
Orientation	Reverse Complement

Create custom LOGO ↧

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Summary

Alignment

Name	SP1_01_M00008_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.29698e-06
E-value	0.00378849
q-value	0.000679243
Overlap	10
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	Bcl6b_secondary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.51832e-06
E-value	0.00443501
q-value	0.000728895
Overlap	13
Offset	1
Orientation	Normal

Create custom LOGO ↧

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Summary

Alignment

Name	PGAM2_4_H
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.01507e-06
E-value	0.00588603
q-value	0.000892958
Overlap	8
Offset	-1
Orientation	Reverse Complement

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Summary

Alignment

Name	KROX_Q6_M00982_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.50969e-06
E-value	0.0073308
q-value	0.00102842
Overlap	10
Offset	4
Orientation	Normal

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Summary

Alignment

Name	Ascl2_secondary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.67781e-06
E-value	0.00782189
q-value	0.00102842
Overlap	13
Offset	3
Orientation	Normal

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Summary

Alignment

Name	CKROX_Q2_M01175_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.34151e-06
E-value	0.00976055
q-value	0.00120311
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	Zfp281_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	5.51041e-06
E-value	0.0160959
q-value	0.00182871
Overlap	13
Offset	2
Orientation	Normal

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Summary

Alignment

Name	GKLF_02_M01588_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	5.71391e-06
E-value	0.0166903
q-value	0.00182871
Overlap	12
Offset	0
Orientation	Normal

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Summary

Alignment

Name	Klf7_primary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.71002e-06
E-value	0.0196
q-value	0.00203448
Overlap	13
Offset	3
Orientation	Normal

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Summary

Alignment

Name	SP1_MA0079.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	7.12311e-06
E-value	0.0208066
q-value	0.00205174
Overlap	10
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	Smad3_secondary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	8.51091e-06
E-value	0.0248604
q-value	0.00233475
Overlap	13
Offset	3
Orientation	Normal

Create custom LOGO ↧

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Summary

Alignment

Name	YGR067C_MA0425.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.28195e-05
E-value	0.0374457
q-value	0.00335684
Overlap	13
Offset	0
Orientation	Normal

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Matches to Query: 25_e_53_0.542

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Matches to Query: 26_e_229_0.540

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Summary

Alignment

Name	HELIOSA_02_M01004_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.5474e-05
E-value	0.0451995
q-value	0.0801265
Overlap	10
Offset	1
Orientation	Normal

Create custom LOGO ↧

[Query Top]

Matches to Query: 27_e_5_0.539

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Summary

Alignment

Name	Rsc3_GR09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.86976e-06
E-value	0.00838257
q-value	0.00926854
Overlap	9
Offset	8
Orientation	Normal

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Summary

Alignment

Name	RSC3_01_M01551_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.17405e-06
E-value	0.0092714
q-value	0.00926854
Overlap	9
Offset	8
Orientation	Normal

Create custom LOGO ↧

[Previous Match] [Query Top]

Matches to Query: 28_e_164_0.539

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Matches to Query: 29_re_15_0.462

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Matches to Query: 30_re_43_0.462

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Matches to Query: 31_e_64_0.538

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Summary

Alignment

Name	MIZF_MA0131.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	4.98982e-06
E-value	0.0145753
q-value	0.0291165
Overlap	8
Offset	2
Orientation	Normal

Create custom LOGO ↧

[Query Top]

Matches to Query: 32_re_86_0.462

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Summary

Alignment

Name	O2_01_M00010_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.00125e-05
E-value	0.0292465
q-value	0.058493
Overlap	9
Offset	5
Orientation	Normal

Create custom LOGO ↧

[Query Top]

Matches to Query: 33_e_284_0.537

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Matches to Query: 34_re_51_0.466

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Matches to Query: 35_e_280_0.534

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Matches to Query: 36_e_315_0.533

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Matches to Query: 37_e_252_0.531

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Matches to Query: 38_e_181_0.527

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Matches to Query: 39_h_7_0.527

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Matches to Query: 40_h_10_0.526

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Summary

Alignment

Name	HLCS_2_H
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.40528e-05
E-value	0.0410482
q-value	0.0820964
Overlap	5
Offset	-2
Orientation	Reverse Complement

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[Query Top]

Matches to Query: 41_re_82_0.474

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Matches to Query: 42_e_294_0.525

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Matches to Query: 43_e_183_0.525

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Summary

Alignment

Name	FEV_MA0156.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.23865e-06
E-value	0.00946009
q-value	0.0188102
Overlap	8
Offset	0
Orientation	Reverse Complement

Create custom LOGO ↧

[Query Top]

Matches to Query: 44_e_42_0.524

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Matches to Query: 45_e_262_0.524

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Matches to Query: 46_re_62_0.481

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Matches to Query: 47_e_87_0.518

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Matches to Query: 48_e_38_0.516

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Summary

Alignment

Name	ANXA11_6_H
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.27794e-05
E-value	0.0373287
q-value	0.0397115
Overlap	6
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	FPM315_01_M01587_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.35952e-05
E-value	0.0397115
q-value	0.0397115
Overlap	9
Offset	3
Orientation	Normal

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Matches to Query: 49_e_313_0.515

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Summary

Alignment

Name	MRPL1_5_H
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	3.33076e-06
E-value	0.00972915
q-value	0.0194583
Overlap	9
Offset	0
Orientation	Reverse Complement

Create custom LOGO ↧

[Query Top]

Matches to Query: 50_e_62_0.515

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Matches to Query: 51_e_322_0.513

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Matches to Query: 52_re_79_0.487

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Matches to Query: 53_e_320_0.511

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Matches to Query: 54_re_67_0.489

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Matches to Query: 55_re_11_0.494

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Matches to Query: 56_h_34_0.506

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Matches to Query: 57_h_33_0.504

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Matches to Query: 58_h_3_0.502

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Summary

Alignment

Name	AP1_01_M00517_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.04248e-10
E-value	1.76501e-06
q-value	1.51729e-06
Overlap	12
Offset	1
Orientation	Reverse Complement

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Summary

Alignment

Name	AP1_C_M00199_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	9.09358e-10
E-value	2.65623e-06
q-value	1.51729e-06
Overlap	9
Offset	-1
Orientation	Reverse Complement

Create custom LOGO ↧

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Summary

Alignment

Name	GCN4_02_M01555_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.30892e-09
E-value	3.82335e-06
q-value	1.51729e-06
Overlap	12
Offset	5
Orientation	Reverse Complement

Create custom LOGO ↧

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Summary

Alignment

Name	GCN4_MA0303.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.30892e-09
E-value	3.82335e-06
q-value	1.51729e-06
Overlap	12
Offset	5
Orientation	Reverse Complement

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Summary

Alignment

Name	Gcn4_GR09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.30892e-09
E-value	3.82335e-06
q-value	1.51729e-06
Overlap	12
Offset	5
Orientation	Reverse Complement

Create custom LOGO ↧

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Summary

Alignment

Name	Jundm2_secondary_SCI09_U
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.5317e-09
E-value	7.3951e-06
q-value	1.63041e-06
Overlap	12
Offset	3
Orientation	Normal

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Summary

Alignment

Name	AP1_Q6_M00174_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.5022e-08
E-value	7.30893e-05
q-value	1.11559e-05
Overlap	11
Offset	0
Orientation	Normal

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Summary

Alignment

Name	GCN4_01_M00038_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.93078e-07
E-value	0.000563981
q-value	7.46051e-05
Overlap	12
Offset	8
Orientation	Normal

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Summary

Alignment

Name	FRA1_Q5_M01267_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.43254e-06
E-value	0.00418444
q-value	0.000461276
Overlap	8
Offset	-2
Orientation	Normal

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Summary

Alignment

Name	Fos_MA0099.1_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.08034e-06
E-value	0.00607668
q-value	0.000602881
Overlap	8
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	AP1_Q4_01_M00926_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.48558e-06
E-value	0.00726038
q-value	0.000654835
Overlap	8
Offset	-2
Orientation	Normal

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Summary

Alignment

Name	AP1_Q6_01_M00925_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	2.85412e-06
E-value	0.00833689
q-value	0.000689268
Overlap	9
Offset	-1
Orientation	Normal

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Summary

Alignment

Name	NFE2_01_M00037_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	4.33601e-06
E-value	0.0126655
q-value	0.00100526
Overlap	10
Offset	1
Orientation	Normal

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Summary

Alignment

Name	BACH2_01_M00490_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	4.90121e-06
E-value	0.0143164
q-value	0.00105212
Overlap	11
Offset	0
Orientation	Normal

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Summary

Alignment

Name	BACH1_01_M00495_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	6.2251e-06
E-value	0.0181835
q-value	0.00128859
Overlap	12
Offset	2
Orientation	Reverse Complement

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Summary

Alignment

Name	AP1_MA0099.2_J
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	7.18315e-06
E-value	0.020982
q-value	0.00143563
Overlap	7
Offset	-2
Orientation	Normal

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Summary

Alignment

Name	MAF_Q6_01_M00983_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	7.86793e-06
E-value	0.0229822
q-value	0.00147104
Overlap	11
Offset	-1
Orientation	Reverse Complement

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Summary

Alignment

Name	AP1_Q4_M00188_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.10359e-05
E-value	0.0322359
q-value	0.0019383
Overlap	11
Offset	0
Orientation	Reverse Complement

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Summary

Alignment

Name	GCN4_Q2_M01713_T
Database	trnsfcJsprUnprobHpdiCmbned3.meme
p-value	1.52756e-05
E-value	0.0446201
q-value	0.0023929
Overlap	11
Offset	0
Orientation	Reverse Complement

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[Previous Match] [Query Top]

Matches to Query: 59_h_12_0.502

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Matches to Query: 60_h_23_0.502

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TOMTOM version

4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)

Reference

Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Command line summary

tomtom -min-overlap 5 -verbosity 1 -oc ./motifs/marks/mes15/mark-k27ac.tomtom -evalue -thresh 0.05 ./motifs/marks/mes15/mark-k27ac.meme /home/john/projects/epigenomics/analysis/motif/mkLib/trnsfcJsprUnprobHpdiCmbned3.meme

Background letter frequencies (from first motif database):

A: 0.295 C: 0.205 G: 0.205 T: 0.295

Result calculation took 157.708 seconds

show model parameters...

Model parameters

distance_measure      = value: "pearson"
threshold             = type: "evalue"
background            = from: "first_target", A: "0.295", C: "0.205", G: "0.205", T: "0.295"
host                  = skat
when                  = Sun Dec 23 15:16:57 2012

Explanation of TOMTOM Results

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The TOMTOM results consist of

The query motifs with links to further information on matches. [View]
The target databases with information on the number of matches. [View]
The matches between query motifs and target motifs. [View]
- The summary of match information.
- An alignment of the two motifs.
The program details including:
1. The version of TOMTOM and the date it was released. [View]
2. The reference to cite if you use TOMTOM in your research. [View]
3. The command line summary detailing the parameters with which you ran TOMTOM. [View]
This explanation of how to interpret TOMTOM results.

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name: The motif name.
Alt. Name: The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website: A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview: The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches: The number of significant matches.
List: Links to the first 20 matches

Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database: The database name.
Number of Motifs: The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched: The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name: The name of the matched motif.
Alt. Name: The alternative name of the matched motif.
p-value: The probability that the match occurred by random chance according to the null model.
E-value: The expected number of false positives in the matches up to this point.
q-value: The minimum False Discovery Rate required to include the match.
Overlap: The number of letters that overlaped in the optimal alignment.
Offset: The offset of the query motif to the matched motif in the optimal alignment.
Orientation: The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.

Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type: Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars: Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC: Toggle adding pseudocounts for Small Sample Correction.
Flip: Toggle a full reverse complement of the alignment.
Width: Specify the width of the generated motif.
Height: Specify the height of the generated motif.

Query Motifs

Name

Preview

Matches

List

Target Databases

Database

Number of Motifs

Motifs Matched

Matches to Query: 1_re_76_0.435

Summary

Alignment

Matches to Query: 2_h_1_0.559

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Matches to Query: 3_re_3_0.442

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Summary

Alignment

Matches to Query: 4_re_63_0.442

Matches to Query: 5_re_52_0.443

Matches to Query: 6_re_47_0.444

Matches to Query: 7_e_83_0.554

Summary

Alignment

Summary

Alignment

Matches to Query: 8_h_21_0.554

Matches to Query: 9_e_31_0.552

Matches to Query: 10_e_76_0.552

Summary

Alignment

Matches to Query: 11_h_16_0.551

Matches to Query: 12_e_35_0.550

Matches to Query: 13_re_10_0.450

Matches to Query: 14_h_5_0.550

Summary

Alignment

Summary