TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

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Name 

Preview 

Matches 

List 

1_h_k27ac-npc_0.572
CTAATTAGCC
93 OG2_02_M01441_T,  Og2x_3719.1_Cell08_U,  Lhx6_3432.1_Cell08_U,  LHX61_02_M01422_T,  HOXB3_01_M01330_T,  Hoxb3_1720.2_Cell08_U,  NKX11_01_M01334_T,  Nkx1-1_3856.3_Cell08_U,  EMX2_01_M01461_T,  CHX10_01_M00437_T
2_h_k27ac-h1_0.567
TTTGCATAACAA
6 OCT4_01_M01125_T,  Pou5f1_MA0142.1_J,  Sox2_MA0143.1_J,  OCT4_02_M01124_T,  OCT1_04_M00138_T,  NANOG_02_M01247_T
3_h_k27ac-npc_0.549
ACAAAGGC
1 ZBTB25_9_H
4_e_k27ac-npc_0.544
AAGGGATTA
15 PITX2_01_M01447_T,  Pitx2_2274.3_Cell08_U,  bcd_MA0212.1_J,  oc_MA0234.1_J,  OTX2_01_M01387_T,  Otx2_3441.1_Cell08_U,  OTX2_Q3_M01719_T,  DOBOX5_01_M01463_T,  Dobox5_3493.1_Cell08_U,  OTX1_01_M01366_T
5_h_k27ac-npc_0.543
CTCATTCAGAGA
0
6_e_k27ac-npc_0.543
GTCAGCTCTGTG
0
7_e_k27ac-h1_0.543
AATCACCTGA
1 sna_MA0086.1_J
8_e_k27ac-npc_0.543
AAGCAGACA
0
9_e_k27ac-npc_0.540
CTGAGCTGA
0
10_e_k27ac-npc_0.539
AAAGAAAGGC
0
11_e_k27ac-npc_0.539
ATTAGAGGA
0
12_e_k27ac-npc_0.538
AGCACAGGC
0
13_e_k27ac-h1_0.538
GCATAACAA
3 Sox2_MA0143.1_J,  Pou5f1_MA0142.1_J,  OCT4_01_M01125_T
14_e_k27ac-h1_0.535
AGACCACCA
1 Zbtb7b_secondary_SCI09_U
15_h_k27ac-npc_0.534
TTCTATTCAGGG
0
16_e_k27ac-npc_0.534
CAGGGCTGGC
0
17_e_k27ac-h1_0.533
AACCACCAAA
0
18_e_k27ac-npc_0.533
CTTTCTTCC
0
19_h_k27ac-npc_0.533
TGCCTGGAGAAA
0
20_e_k27ac-npc_0.533
AACGAGCAG
0
21_e_k27ac-npc_0.532
AGCTGCACA
0
22_h_k27ac-npc_0.532
AGTTAATTGCTC
0
23_e_k27ac-npc_0.532
CTGAAAGGAG
0
24_e_k27ac-h1_0.531
GCACGTATA
0
25_h_k27ac-npc_0.531
GCCTTTGAAAGG
0
26_e_k27ac-npc_0.531
GTGAACAAA
0
27_e_k27ac-h1_0.531
GGTAGGTAAG
0
28_e_k27ac-h1_0.530
TGCCCCACCC
7 Klf4_MA0039.2_J,  GKLF_02_M01588_T,  SP1_Q6_01_M00931_T,  ALFIN1_Q2_M00479_T,  SP1_Q4_01_M00932_T,  UF1H3BETA_Q6_M01068_T,  SP4_Q5_M01273_T
29_e_k27ac-npc_0.530
AATGGCTGC
1 REX1_01_M01695_T
30_e_k27ac-h1_0.530
TCGTATACC
0
31_e_k27ac-npc_0.528
CAGAGCGT
0
32_e_k27ac-npc_0.528
AACGCTGAA
0
33_h_k27ac-npc_0.528
GCACACACAC
0
34_e_k27ac-h1_0.528
ACCAGGTAT
0
35_e_k27ac-h1_0.527
ACAGGCGTA
0
36_e_k27ac-npc_0.526
ACGAATGCA
0
37_e_k27ac-npc_0.526
ACAGAATGC
0
38_e_k27ac-h1_0.526
ACGTAGTA
0
39_e_k27ac-npc_0.526
GGCTCCTGA
0
40_e_k27ac-npc_0.526
GAGCTGGAAC
1 PAX6_Q2_M00979_T
41_e_k27ac-npc_0.525
GACAGTTCAT
0
42_e_k27ac-npc_0.525
GAGGAATGTG
2 TEAD1_MA0090.1_J,  TEF_01_M01305_T
43_h_k27ac-h1_0.525
GGGAGTTACG
0
44_e_k27ac-npc_0.525
AATGGGGCT
0
45_e_k27ac-npc_0.524
AAACAGCCCA
0
46_e_k27ac-npc_0.523
CTGTTTCTC
0
47_h_k27ac-npc_0.523
AAATGCCTCC
0
48_e_k27ac-h1_0.523
CGGGTGGTA
0
49_e_k27ac-h1_0.522
GACCTCAC
0
50_h_k27ac-h1_0.522
ACCCTTAC
0
51_e_k27ac-h1_0.522
CCCAAGTT
0
52_e_k27ac-npc_0.522
AGGCTGAAA
0
53_e_k27ac-h1_0.521
ACGATCTTC
0
54_e_k27ac-h1_0.521
GGTGGTTAC
0
55_e_k27ac-npc_0.521
ATTAGGAAG
0
56_e_k27ac-h1_0.520
CCTGGCTCA
0
57_e_k27ac-h1_0.520
CCACATCGA
0
58_e_k27ac-h1_0.519
ACCTGTAGG
0
59_e_k27ac-npc_0.519
CAAGACAGA
0
60_e_k27ac-npc_0.519
AATAGCCTG
0
61_e_k27ac-h1_0.518
TGACTGTAAA
0
62_e_k27ac-npc_0.518
TCTCCGTCA
0
63_e_k27ac-npc_0.518
AAAAGGTCAC
4 Rara_primary_SCI09_U,  NR4A2_MA0160.1_J,  GTF3C5_2_H,  Nr2f2_primary_SCI09_U
64_e_k27ac-npc_0.518
AACGCTGG
0
65_e_k27ac-h1_0.517
AGCGCCCCG
0
66_e_k27ac-h1_0.517
AAGGTTATTC
0
67_e_k27ac-h1_0.516
CCGCGTCGC
0
68_e_k27ac-npc_0.516
ACATTTCAC
0
69_e_k27ac-npc_0.515
ACCGTTGG
0
70_e_k27ac-h1_0.515
CCTCCGTCGG
0
71_e_k27ac-npc_0.515
AATAACGAC
0
72_e_k27ac-npc_0.514
TCTTTAGAAA
0
73_e_k27ac-npc_0.514
TGGAACACGG
0
74_e_k27ac-h1_0.512
CCTTCCGG
0
75_e_k27ac-h1_0.512
ATTCCACCA
0
76_e_k27ac-h1_0.512
GCGAGATCC
0
77_e_k27ac-h1_0.511
GACCAGCCA
0
78_e_k27ac-npc_0.511
GACAATAG
0
79_e_k27ac-npc_0.507
TGGCAGATGAC
0
80_e_k27ac-h1_0.504
ATTTAGCCG
0

Target Databases

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Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiCmbned3.meme 2921 132

Matches to Query: 1_h_k27ac-npc_0.572

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Summary 

Alignment 

Name OG2_02_M01441_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.22556e-10
E-value 2.11059e-06
q-value 1.91239e-06
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name Og2x_3719.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.22556e-10
E-value 2.11059e-06
q-value 1.91239e-06
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name Lhx6_3432.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.09833e-09
E-value 1.19712e-05
q-value 7.23137e-06
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name LHX61_02_M01422_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.03686e-09
E-value 1.76337e-05
q-value 7.98888e-06
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name HOXB3_01_M01330_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.07268e-08
E-value 0.000177383
q-value 4.01814e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name Hoxb3_1720.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.07268e-08
E-value 0.000177383
q-value 4.01814e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name NKX11_01_M01334_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.07268e-08
E-value 0.000177383
q-value 4.01814e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Nkx1-1_3856.3_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.07268e-08
E-value 0.000177383
q-value 4.01814e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name EMX2_01_M01461_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.04611e-08
E-value 0.000235027
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name CHX10_01_M00437_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.5657e-08
E-value 0.000250204
q-value 4.24346e-05
Overlap 10
Offset 4
Orientation Reverse Complement
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Summary 

Alignment 

Name Hoxd1_3448.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.05523e-07
E-value 0.000308232
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name GSH2_01_M01326_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.54318e-07
E-value 0.000450762
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name Gsh2_3990.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.54318e-07
E-value 0.000450762
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name ISX_01_M01331_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.54318e-07
E-value 0.000450762
q-value 4.24346e-05
Overlap 10
Offset 4
Orientation Reverse Complement
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Summary 

Alignment 

Name Isx_3445.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.54318e-07
E-value 0.000450762
q-value 4.24346e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Emx2_3420.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.76363e-07
E-value 0.000515156
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name HOXD1_01_M01448_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.76363e-07
E-value 0.000515156
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx4_1719.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.76363e-07
E-value 0.000515156
q-value 4.24346e-05
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name CG9876_MA0184.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.87332e-07
E-value 0.000547197
q-value 4.3114e-05
Overlap 7
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name LH2_01_M01325_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.24964e-07
E-value 0.000657121
q-value 4.76331e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX4_01_M01421_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.24964e-07
E-value 0.000657121
q-value 4.76331e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx2_0953.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.84567e-07
E-value 0.000831219
q-value 5.51331e-05
Overlap 10
Offset 4
Orientation Normal
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Summary 

Alignment 

Name NKX12_01_M01427_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.57101e-07
E-value 0.00104309
q-value 6.09767e-05
Overlap 10
Offset 4
Orientation Reverse Complement
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Summary 

Alignment 

Name EVX1_01_M01475_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.44732e-07
E-value 0.00129906
q-value 6.72613e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Evx1_3952.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.44732e-07
E-value 0.00129906
q-value 6.72613e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX8_01_M01440_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.44732e-07
E-value 0.00129906
q-value 6.72613e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Nkx1-2_3214.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.44732e-07
E-value 0.00129906
q-value 6.72613e-05
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ro_MA0241.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.85018e-07
E-value 0.00141674
q-value 7.13165e-05
Overlap 7
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name EN2_01_M01455_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.49876e-07
E-value 0.00160619
q-value 7.27679e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name En2_0952.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.49876e-07
E-value 0.00160619
q-value 7.27679e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx8_2247.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.49876e-07
E-value 0.00160619
q-value 7.27679e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name IPF1_01_M01233_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.64419e-07
E-value 0.00164867
q-value 7.28706e-05
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gbx2_3110.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.75213e-07
E-value 0.0019723
q-value 7.60463e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RAX_01_M01389_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.75213e-07
E-value 0.0019723
q-value 7.60463e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rax_3443.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.75213e-07
E-value 0.0019723
q-value 7.60463e-05
Overlap 10
Offset 4
Orientation Normal
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Summary 

Alignment 

Name OdsH_MA0198.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.42321e-07
E-value 0.00216832
q-value 8.01919e-05
Overlap 7
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name OdsH_MA0455.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.42321e-07
E-value 0.00216832
q-value 8.01919e-05
Overlap 7
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name GBX2_01_M01382_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.23706e-07
E-value 0.00240604
q-value 8.38501e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PAX7_01_M01339_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.23706e-07
E-value 0.00240604
q-value 8.38501e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Pax7_3783.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.23706e-07
E-value 0.00240604
q-value 8.38501e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa3_2783.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.01555e-07
E-value 0.00263344
q-value 9.00432e-05
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Evx2_2645.3_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.98616e-07
E-value 0.00291696
q-value 9.27382e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PAX4_05_M01385_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.98616e-07
E-value 0.00291696
q-value 9.27382e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Pax4_3989.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.98616e-07
E-value 0.00291696
q-value 9.27382e-05
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EVX2_01_M01386_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.20353e-06
E-value 0.0035155
q-value 9.95429e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Prrx2_3072.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.20353e-06
E-value 0.0035155
q-value 9.95429e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name S8_02_M01376_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.20353e-06
E-value 0.0035155
q-value 9.95429e-05
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXA3_02_M01337_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.2748e-06
E-value 0.00372368
q-value 0.000103816
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Vax2_3500.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.50451e-06
E-value 0.00439469
q-value 0.000112169
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name IPF1_06_M01438_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.78446e-06
E-value 0.00521242
q-value 0.000122674
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Ipf1_3815.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.78446e-06
E-value 0.00521242
q-value 0.000122674
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name VAX2_01_M01327_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.78446e-06
E-value 0.00521242
q-value 0.000122674
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name S8_01_M00099_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.10639e-06
E-value 0.00615276
q-value 0.000142948
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Pph13_MA0200.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.11222e-06
E-value 0.00909078
q-value 0.000203385
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EN1_02_M01365_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.37455e-06
E-value 0.00985705
q-value 0.000212653
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name En1_3123.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.37455e-06
E-value 0.00985705
q-value 0.000212653
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.73334e-06
E-value 0.0109051
q-value 0.000231952
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBX1_01_M01371_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.85608e-06
E-value 0.0112636
q-value 0.000231952
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gbx1_2883.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.85608e-06
E-value 0.0112636
q-value 0.000231952
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa5_3415.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.91716e-06
E-value 0.011442
q-value 0.000232978
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOX13_02_M01452_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.53052e-06
E-value 0.0132336
q-value 0.000249811
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxd3_1742.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.53052e-06
E-value 0.0132336
q-value 0.000249811
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LBX2_01_M01401_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.17655e-06
E-value 0.0151207
q-value 0.000265787
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lbx2_3869.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.17655e-06
E-value 0.0151207
q-value 0.000265787
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SHOX2_01_M01415_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.17655e-06
E-value 0.0151207
q-value 0.000265787
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXD3_01_M01338_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.22194e-06
E-value 0.0152533
q-value 0.000265787
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lim3_MA0195.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.62069e-06
E-value 0.016418
q-value 0.000273767
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rx_MA0202.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.62069e-06
E-value 0.016418
q-value 0.000273767
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ap_MA0209.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.62069e-06
E-value 0.016418
q-value 0.000273767
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ESX1_01_M01474_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.96623e-06
E-value 0.0174274
q-value 0.000273767
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Esx1_3124.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.96623e-06
E-value 0.0174274
q-value 0.000273767
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Shox2_2641.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.96623e-06
E-value 0.0174274
q-value 0.000273767
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXB5_01_M01319_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.99936e-06
E-value 0.0175241
q-value 0.000273767
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name VAX1_01_M01397_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.99936e-06
E-value 0.0175241
q-value 0.000273767
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Vax1_3499.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.99936e-06
E-value 0.0175241
q-value 0.000273767
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name IPF1_03_M01235_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.53146e-06
E-value 0.0190784
q-value 0.000295501
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hlxb9_3422.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.87138e-06
E-value 0.0200713
q-value 0.000300603
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HB9_01_M01349_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.84732e-06
E-value 0.022922
q-value 0.000319626
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXA1_01_M01487_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.84732e-06
E-value 0.022922
q-value 0.000319626
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxb5_3122.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.84732e-06
E-value 0.022922
q-value 0.000319626
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MSX2_01_M01393_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.84965e-06
E-value 0.0229288
q-value 0.000319626
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Msx2_3449.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.84965e-06
E-value 0.0229288
q-value 0.000319626
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HOXA2_01_M01402_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.93725e-06
E-value 0.0261057
q-value 0.000348887
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa1_3425.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.93725e-06
E-value 0.0261057
q-value 0.000348887
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name LHX61_01_M01314_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.96373e-06
E-value 0.0261831
q-value 0.000348887
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Lhx6_2272.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.96373e-06
E-value 0.0261831
q-value 0.000348887
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Hoxa2_3079.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.01521e-05
E-value 0.0296542
q-value 0.000386611
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Phox2a_3947.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.01521e-05
E-value 0.0296542
q-value 0.000386611
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name DLX5_01_M01388_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.15035e-05
E-value 0.0336018
q-value 0.000419951
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Dlx5_3419.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.15035e-05
E-value 0.0336018
q-value 0.000419951
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PMX2A_01_M01444_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.46682e-05
E-value 0.0428459
q-value 0.000524627
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PSX1_01_M01435_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.67444e-05
E-value 0.0489103
q-value 0.00057555
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rhox6_4251.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.67444e-05
E-value 0.0489103
q-value 0.00057555
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 2_h_k27ac-h1_0.567

 Previous Next Top

Summary 

Alignment 

Name OCT4_01_M01125_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.63363e-11
E-value 7.69284e-08
q-value 1.53068e-07
Overlap 12
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Pou5f1_MA0142.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.04779e-11
E-value 1.76656e-07
q-value 1.75751e-07
Overlap 12
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox2_MA0143.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.62831e-10
E-value 7.67729e-07
q-value 5.09196e-07
Overlap 12
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OCT4_02_M01124_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.06411e-07
E-value 0.00118713
q-value 0.000590521
Overlap 12
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OCT1_04_M00138_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.10136e-06
E-value 0.0207431
q-value 0.00825471
Overlap 12
Offset 8
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name NANOG_02_M01247_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.41596e-05
E-value 0.0413603
q-value 0.0137161
Overlap 12
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 3_h_k27ac-npc_0.549

 Previous Next Top

Summary 

Alignment 

Name ZBTB25_9_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.44249e-05
E-value 0.042135
q-value 0.0706196
Overlap 6
Offset -1
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 4_e_k27ac-npc_0.544

 Previous Next Top

Summary 

Alignment 

Name PITX2_01_M01447_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.58025e-07
E-value 0.00104579
q-value 0.00104241
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Pitx2_2274.3_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.58025e-07
E-value 0.00104579
q-value 0.00104241
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name bcd_MA0212.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.81027e-06
E-value 0.0082088
q-value 0.00259526
Overlap 6
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name oc_MA0234.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.81027e-06
E-value 0.0082088
q-value 0.00259526
Overlap 6
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OTX2_01_M01387_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.14728e-06
E-value 0.00919322
q-value 0.00259526
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Otx2_3441.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.66597e-06
E-value 0.0107083
q-value 0.00259526
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OTX2_Q3_M01719_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.10181e-06
E-value 0.0119814
q-value 0.00259526
Overlap 9
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name DOBOX5_01_M01463_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.90251e-06
E-value 0.0143202
q-value 0.00259526
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Dobox5_3493.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.90251e-06
E-value 0.0143202
q-value 0.00259526
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OTX1_01_M01366_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.90251e-06
E-value 0.0143202
q-value 0.00259526
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Otx1_2325.1_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.90251e-06
E-value 0.0143202
q-value 0.00259526
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OBOX5_01_M01381_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.57205e-06
E-value 0.02796
q-value 0.00421224
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GSC_01_M01428_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.08505e-05
E-value 0.0316943
q-value 0.00421224
Overlap 9
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Gsc_2327.3_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.08505e-05
E-value 0.0316943
q-value 0.00421224
Overlap 9
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Obox5_3963.2_Cell08_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.08505e-05
E-value 0.0316943
q-value 0.00421224
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 5_h_k27ac-npc_0.543

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Matches to Query: 6_e_k27ac-npc_0.543

 Previous Next Top

Matches to Query: 7_e_k27ac-h1_0.543

 Previous Next Top

Summary 

Alignment 

Name sna_MA0086.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.58561e-06
E-value 0.00755258
q-value 0.014879
Overlap 6
Offset -3
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 8_e_k27ac-npc_0.543

 Previous Next Top

Matches to Query: 9_e_k27ac-npc_0.540

 Previous Next Top

Matches to Query: 10_e_k27ac-npc_0.539

 Previous Next Top

Matches to Query: 11_e_k27ac-npc_0.539

 Previous Next Top

Matches to Query: 12_e_k27ac-npc_0.538

 Previous Next Top

Matches to Query: 13_e_k27ac-h1_0.538

 Previous Next Top

Summary 

Alignment 

Name Sox2_MA0143.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.85691e-07
E-value 0.000834502
q-value 0.00166705
Overlap 9
Offset 3
Orientation Reverse Complement
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Summary 

Alignment 

Name Pou5f1_MA0142.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.58361e-06
E-value 0.00462573
q-value 0.00462033
Overlap 9
Offset 4
Orientation Reverse Complement
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Summary 

Alignment 

Name OCT4_01_M01125_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.655e-06
E-value 0.0165183
q-value 0.0109993
Overlap 9
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 14_e_k27ac-h1_0.535

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Summary 

Alignment 

Name Zbtb7b_secondary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.79225e-06
E-value 0.0198402
q-value 0.0396803
Overlap 9
Offset 4
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 15_h_k27ac-npc_0.534

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Matches to Query: 16_e_k27ac-npc_0.534

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Matches to Query: 17_e_k27ac-h1_0.533

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Matches to Query: 18_e_k27ac-npc_0.533

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Matches to Query: 19_h_k27ac-npc_0.533

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Matches to Query: 20_e_k27ac-npc_0.533

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Matches to Query: 21_e_k27ac-npc_0.532

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Matches to Query: 22_h_k27ac-npc_0.532

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Matches to Query: 23_e_k27ac-npc_0.532

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Matches to Query: 24_e_k27ac-h1_0.531

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Matches to Query: 25_h_k27ac-npc_0.531

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Matches to Query: 26_e_k27ac-npc_0.531

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Matches to Query: 27_e_k27ac-h1_0.531

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Matches to Query: 28_e_k27ac-h1_0.530

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Summary 

Alignment 

Name Klf4_MA0039.2_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.4077e-07
E-value 0.00245589
q-value 0.00486886
Overlap 9
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name GKLF_02_M01588_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.02649e-06
E-value 0.0117614
q-value 0.00978637
Overlap 9
Offset -1
Orientation Normal
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Summary 

Alignment 

Name SP1_Q6_01_M00931_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.06982e-06
E-value 0.0148089
q-value 0.00978637
Overlap 9
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name ALFIN1_Q2_M00479_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.36509e-06
E-value 0.0215134
q-value 0.0106627
Overlap 10
Offset 1
Orientation Reverse Complement
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Summary 

Alignment 

Name SP1_Q4_01_M00932_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.191e-05
E-value 0.0347892
q-value 0.0127608
Overlap 10
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name UF1H3BETA_Q6_M01068_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.44481e-05
E-value 0.042203
q-value 0.0127608
Overlap 9
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name SP4_Q5_M01273_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.63509e-05
E-value 0.0477609
q-value 0.0127608
Overlap 9
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 29_e_k27ac-npc_0.530

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Summary 

Alignment 

Name REX1_01_M01695_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.61921e-08
E-value 0.000164137
q-value 0.000328274
Overlap 9
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 30_e_k27ac-h1_0.530

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Matches to Query: 31_e_k27ac-npc_0.528

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Matches to Query: 32_e_k27ac-npc_0.528

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Matches to Query: 33_h_k27ac-npc_0.528

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Matches to Query: 34_e_k27ac-h1_0.528

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Matches to Query: 35_e_k27ac-h1_0.527

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Matches to Query: 36_e_k27ac-npc_0.526

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Matches to Query: 37_e_k27ac-npc_0.526

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Matches to Query: 38_e_k27ac-h1_0.526

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Matches to Query: 39_e_k27ac-npc_0.526

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Matches to Query: 40_e_k27ac-npc_0.526

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Summary 

Alignment 

Name PAX6_Q2_M00979_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.66161e-05
E-value 0.0485355
q-value 0.0970711
Overlap 10
Offset 2
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 41_e_k27ac-npc_0.525

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Matches to Query: 42_e_k27ac-npc_0.525

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Summary 

Alignment 

Name TEAD1_MA0090.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.56408e-07
E-value 0.00162527
q-value 0.00162527
Overlap 10
Offset 2
Orientation Reverse Complement
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Summary 

Alignment 

Name TEF_01_M01305_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.56408e-07
E-value 0.00162527
q-value 0.00162527
Overlap 10
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 43_h_k27ac-h1_0.525

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Matches to Query: 44_e_k27ac-npc_0.525

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Matches to Query: 45_e_k27ac-npc_0.524

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Matches to Query: 46_e_k27ac-npc_0.523

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Matches to Query: 47_h_k27ac-npc_0.523

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Matches to Query: 48_e_k27ac-h1_0.523

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Matches to Query: 49_e_k27ac-h1_0.522

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Matches to Query: 50_h_k27ac-h1_0.522

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Matches to Query: 51_e_k27ac-h1_0.522

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Matches to Query: 52_e_k27ac-npc_0.522

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Matches to Query: 53_e_k27ac-h1_0.521

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Matches to Query: 54_e_k27ac-h1_0.521

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Matches to Query: 55_e_k27ac-npc_0.521

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Matches to Query: 56_e_k27ac-h1_0.520

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Matches to Query: 57_e_k27ac-h1_0.520

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Matches to Query: 58_e_k27ac-h1_0.519

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Matches to Query: 59_e_k27ac-npc_0.519

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Matches to Query: 60_e_k27ac-npc_0.519

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Matches to Query: 61_e_k27ac-h1_0.518

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Matches to Query: 62_e_k27ac-npc_0.518

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Matches to Query: 63_e_k27ac-npc_0.518

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Summary 

Alignment 

Name Rara_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.82943e-06
E-value 0.0141068
q-value 0.0163748
Overlap 10
Offset 3
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name NR4A2_MA0160.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.94343e-06
E-value 0.0202818
q-value 0.0163748
Overlap 8
Offset -2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GTF3C5_2_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.46827e-06
E-value 0.0247358
q-value 0.0163748
Overlap 6
Offset -4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Nr2f2_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.68313e-05
E-value 0.0491641
q-value 0.0244096
Overlap 10
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 64_e_k27ac-npc_0.518

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Matches to Query: 65_e_k27ac-h1_0.517

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Matches to Query: 66_e_k27ac-h1_0.517

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Matches to Query: 67_e_k27ac-h1_0.516

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Matches to Query: 68_e_k27ac-npc_0.516

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Matches to Query: 69_e_k27ac-npc_0.515

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Matches to Query: 70_e_k27ac-h1_0.515

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Matches to Query: 71_e_k27ac-npc_0.515

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Matches to Query: 72_e_k27ac-npc_0.514

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Matches to Query: 73_e_k27ac-npc_0.514

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Matches to Query: 74_e_k27ac-h1_0.512

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Matches to Query: 75_e_k27ac-h1_0.512

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Matches to Query: 76_e_k27ac-h1_0.512

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Matches to Query: 77_e_k27ac-h1_0.511

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Matches to Query: 78_e_k27ac-npc_0.511

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Matches to Query: 79_e_k27ac-npc_0.507

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Matches to Query: 80_e_k27ac-h1_0.504

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TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 194.877 seconds
show model parameters...

Explanation of TOMTOM Results

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The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.