TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

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Name 

Preview 

Matches 

List 

1_h_k27ac-msc_0.623
ATGACTCATTAA
13 GCN4_MA0303.1_J,  Gcn4_GR09_U,  GCN4_02_M01555_T,  Jundm2_secondary_SCI09_U,  AP1_C_M00199_T,  AP1_01_M00517_T,  Fos_MA0099.1_J,  GCN4_01_M00038_T,  AP1_Q6_M00174_T,  AP1_Q6_01_M00925_T
2_h_k27ac-h1_0.597
TTGTTATGCAAA
5 Pou5f1_MA0142.1_J,  OCT4_01_M01125_T,  Sox2_MA0143.1_J,  OCT4_02_M01124_T,  NFIX_2_H
3_h_k27ac-h1_0.559
TGACAAAGGG
7 SMAD1_01_M01590_T,  NANOG_02_M01247_T,  Sox4_CR09_U,  SOX2_Q6_M01272_T,  Sox4_primary_SCI09_U,  Sox2_MA0143.1_J,  SOX9_Q4_M01284_T
4_h_k27ac-h1_0.548
GGGGGGGGGG
10 Zfp281_primary_SCI09_U,  MAZR_01_M00491_T,  Zfp740_primary_SCI09_U,  SP1_MA0079.2_J,  ZNF219_01_M01122_T,  ZFP281_01_M01597_T,  SP1_Q2_01_M00933_T,  UF1H3BETA_Q6_M01068_T,  GPD1_4_H,  SP1_02_M01303_T
5_h_k27ac-msc_0.544
CTAACCACAG
5 AML_Q6_M00769_T,  PEBP_Q6_M00984_T,  COREBINDINGFACTOR_Q6_M00722_T,  AML1_Q4_M01658_T,  RUNX1_MA0002.2_J
6_e_k27ac-msc_0.537
ATGACATCA
0
7_e_k27ac-msc_0.535
CATTCCAGA
1 HNRPH3_9_H
8_h_k27ac-msc_0.534
ACATTCCTCA
1 ABAA_01_M00027_T
9_e_k27ac-msc_0.533
CTGACCACAC
0
10_e_k27ac-msc_0.533
GACTCATGC
0
11_e_k27ac-msc_0.530
TACAGCTGAG
1 NEUROD_01_M01287_T
12_h_k27ac-h1_0.530
AAACAGGCTTTT
0
13_e_k27ac-msc_0.529
ATGTCTGGA
1 Smad3_primary_SCI09_U
14_e_k27ac-h1_0.526
GTAGGTAAAG
0
15_e_k27ac-h1_0.526
CCCCTCGCG
0
16_e_k27ac-h1_0.526
AAGAAAAGG
0
17_e_k27ac-msc_0.525
ATTCCTGAGCC
0
18_e_k27ac-h1_0.525
ACGGACGCG
0
19_e_k27ac-msc_0.525
ACTGTGTTC
0
20_e_k27ac-h1_0.523
CACCTTACG
0
21_e_k27ac-h1_0.523
GCACGTATAC
0
22_e_k27ac-msc_0.521
ATCATCGTA
0
23_e_k27ac-h1_0.521
AATAAAGC
0
24_e_k27ac-h1_0.521
GGCCCCGCCA
5 SP1_Q6_M00196_T,  SP1_Q4_01_M00932_T,  GC-box_POL003.1_J,  GC_01_M00255_T,  SP1_Q6_01_M00931_T
25_e_k27ac-msc_0.519
AGCCAGGAGT
0
26_h_k27ac-h1_0.517
TAAGATTTGCGT
0
27_e_k27ac-h1_0.517
CCCAAAATAG
0
28_e_k27ac-msc_0.514
ACTGCTCCA
0
29_e_k27ac-h1_0.509
AGGTGCTCAC
0
30_e_k27ac-msc_0.507
ATTTGGAGA
0

Target Databases

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Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiCmbned3.meme 2921 48

Matches to Query: 1_h_k27ac-msc_0.623

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Summary 

Alignment 

Name GCN4_MA0303.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.93741e-09
E-value 5.65917e-06
q-value 5.00876e-06
Overlap 12
Offset 6
Orientation Normal
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Summary 

Alignment 

Name Gcn4_GR09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.93741e-09
E-value 5.65917e-06
q-value 5.00876e-06
Overlap 12
Offset 6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GCN4_02_M01555_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.58984e-09
E-value 7.56493e-06
q-value 5.00876e-06
Overlap 12
Offset 6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Jundm2_secondary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.22568e-08
E-value 3.58021e-05
q-value 1.01592e-05
Overlap 12
Offset 4
Orientation Normal
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Summary 

Alignment 

Name AP1_C_M00199_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 4.47324e-08
E-value 0.000130663
q-value 2.88375e-05
Overlap 9
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_01_M00517_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.51468e-07
E-value 0.00102664
q-value 0.000165304
Overlap 11
Offset 2
Orientation Normal
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Summary 

Alignment 

Name Fos_MA0099.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.7038e-07
E-value 0.00108188
q-value 0.000165304
Overlap 8
Offset -1
Orientation Reverse Complement
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Summary 

Alignment 

Name GCN4_01_M00038_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.4494e-07
E-value 0.00217597
q-value 0.000308725
Overlap 12
Offset 9
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q6_M00174_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.36074e-06
E-value 0.00397473
q-value 0.000521028
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q6_01_M00925_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.50864e-06
E-value 0.00440673
q-value 0.000521028
Overlap 9
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name FRA1_Q5_M01267_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.69325e-06
E-value 0.00786697
q-value 0.000822434
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_Q4_01_M00926_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.206e-06
E-value 0.00936473
q-value 0.000910213
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AP1_MA0099.2_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.55415e-06
E-value 0.0103817
q-value 0.000910213
Overlap 7
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 2_h_k27ac-h1_0.597

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Summary 

Alignment 

Name Pou5f1_MA0142.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.2361e-16
E-value 6.53165e-13
q-value 1.29784e-12
Overlap 12
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name OCT4_01_M01125_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.11758e-13
E-value 3.26446e-10
q-value 3.24323e-10
Overlap 12
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox2_MA0143.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.65064e-10
E-value 1.65055e-06
q-value 1.09322e-06
Overlap 12
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name OCT4_02_M01124_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.30284e-08
E-value 0.000271736
q-value 0.000134985
Overlap 12
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name NFIX_2_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.4398e-06
E-value 0.0246527
q-value 0.00979695
Overlap 6
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 3_h_k27ac-h1_0.559

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Summary 

Alignment 

Name SMAD1_01_M01590_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.34276e-09
E-value 3.92221e-06
q-value 7.81502e-06
Overlap 10
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name NANOG_02_M01247_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.30776e-07
E-value 0.000674097
q-value 0.00067157
Overlap 10
Offset 6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox4_CR09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.66436e-07
E-value 0.00107036
q-value 0.000710898
Overlap 10
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SOX2_Q6_M01272_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.40302e-06
E-value 0.00994022
q-value 0.00495148
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox4_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.0681e-06
E-value 0.0177249
q-value 0.00599152
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Sox2_MA0143.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.17672e-06
E-value 0.0180422
q-value 0.00599152
Overlap 9
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SOX9_Q4_M01284_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.25496e-06
E-value 0.0241127
q-value 0.00686353
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 4_h_k27ac-h1_0.548

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Summary 

Alignment 

Name Zfp281_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.89362e-10
E-value 1.72153e-06
q-value 3.41534e-06
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MAZR_01_M00491_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.91862e-07
E-value 0.00114463
q-value 0.00100241
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.18937e-07
E-value 0.00151582
q-value 0.00100241
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_MA0079.2_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.14742e-07
E-value 0.00208776
q-value 0.00103548
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF219_01_M01122_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 9.08551e-07
E-value 0.00265388
q-value 0.00105301
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZFP281_01_M01597_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.78783e-06
E-value 0.00814326
q-value 0.00269257
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q2_01_M00933_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.88682e-06
E-value 0.0230374
q-value 0.00630377
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UF1H3BETA_Q6_M01068_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.7024e-06
E-value 0.0254197
q-value 0.00630377
Overlap 10
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GPD1_4_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.15052e-05
E-value 0.0336068
q-value 0.00740806
Overlap 8
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_02_M01303_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.33338e-05
E-value 0.0389481
q-value 0.00772692
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 5_h_k27ac-msc_0.544

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Summary 

Alignment 

Name AML_Q6_M00769_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 3.02541e-07
E-value 0.000883722
q-value 0.00158624
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name PEBP_Q6_M00984_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.43048e-07
E-value 0.00158624
q-value 0.00158624
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name COREBINDINGFACTOR_Q6_M00722_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 5.06507e-06
E-value 0.0147951
q-value 0.00986338
Overlap 8
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name AML1_Q4_M01658_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.04866e-05
E-value 0.0306314
q-value 0.0153157
Overlap 7
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RUNX1_MA0002.2_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.62328e-05
E-value 0.0474161
q-value 0.0167758
Overlap 9
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 6_e_k27ac-msc_0.537

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Matches to Query: 7_e_k27ac-msc_0.535

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Summary 

Alignment 

Name HNRPH3_9_H
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.43347e-06
E-value 0.0217132
q-value 0.0434263
Overlap 6
Offset -2
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 8_h_k27ac-msc_0.534

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Summary 

Alignment 

Name ABAA_01_M00027_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 6.10093e-06
E-value 0.0178208
q-value 0.0356416
Overlap 10
Offset 6
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 9_e_k27ac-msc_0.533

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Matches to Query: 10_e_k27ac-msc_0.533

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Matches to Query: 11_e_k27ac-msc_0.530

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Summary 

Alignment 

Name NEUROD_01_M01287_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 8.69469e-06
E-value 0.0253972
q-value 0.0253413
Overlap 6
Offset -2
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: 12_h_k27ac-h1_0.530

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Matches to Query: 13_e_k27ac-msc_0.529

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Summary 

Alignment 

Name Smad3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.58983e-05
E-value 0.046439
q-value 0.092878
Overlap 9
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: 14_e_k27ac-h1_0.526

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Matches to Query: 15_e_k27ac-h1_0.526

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Matches to Query: 16_e_k27ac-h1_0.526

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Matches to Query: 17_e_k27ac-msc_0.525

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Matches to Query: 18_e_k27ac-h1_0.525

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Matches to Query: 19_e_k27ac-msc_0.525

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Matches to Query: 20_e_k27ac-h1_0.523

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Matches to Query: 21_e_k27ac-h1_0.523

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Matches to Query: 22_e_k27ac-msc_0.521

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Matches to Query: 23_e_k27ac-h1_0.521

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Matches to Query: 24_e_k27ac-h1_0.521

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Summary 

Alignment 

Name SP1_Q6_M00196_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.75138e-06
E-value 0.00511578
q-value 0.00610841
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q4_01_M00932_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 2.10526e-06
E-value 0.00614945
q-value 0.00610841
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GC-box_POL003.1_J
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.77665e-06
E-value 0.0227156
q-value 0.011282
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GC_01_M00255_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 7.77665e-06
E-value 0.0227156
q-value 0.011282
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q6_01_M00931_T
Database trnsfcJsprUnprobHpdiCmbned3.meme
p-value 1.47902e-05
E-value 0.0432021
q-value 0.0171655
Overlap 9
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: 25_e_k27ac-msc_0.519

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Matches to Query: 26_h_k27ac-h1_0.517

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Matches to Query: 27_e_k27ac-h1_0.517

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Matches to Query: 28_e_k27ac-msc_0.514

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Matches to Query: 29_e_k27ac-h1_0.509

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Matches to Query: 30_e_k27ac-msc_0.507

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TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 83.256 seconds
show model parameters...

Explanation of TOMTOM Results

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The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.