TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

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Name 

Preview 

Matches 

List 

h115-k27ac-11_re_4_0.444
ACGTGGCCT
4 BZIP911_01_M00358_T,  PIF3_01_M00434_T,  XBP1_02_M01770_T,  PIF3_02_M00435_T
mes15-k27ac-3_re_3_0.442
CACGTGGCCA
15 ABF1_02_M00400_T,  GBF_Q2_M00441_T,  PIF3_02_M00435_T,  Creb3l2_dimeric_1_P,  CG1_Q6_M00440_T,  PIF3_01_M00434_T,  CREB3L1_dimeric_1_P,  GBP_Q6_M00182_T,  ABF_Q2_M00442_T,  EMBP1_Q2_M00366_T
mes15-k27me3-7_re_1_0.416
CACGTGGCCT
20 PIF3_02_M00435_T,  PIF3_01_M00434_T,  ABF1_02_M00400_T,  GBF_Q2_M00441_T,  Creb3l2_dimeric_1_P,  CG1_Q6_M00440_T,  CMYC_02_M01154_T,  USF1_MA0093.1_J,  GBP_Q6_M00182_T,  ABF_Q2_M00442_T
msc15-k27ac-11_re_35_0.461
CACGTGGCAT
7 Creb3l2_dimeric_1_P,  CREB3L1_dimeric_2_P,  CREB3L1_dimeric_1_P,  CREB3L1_dimeric_4_P,  CG1_Q6_M00440_T,  GBF_Q2_M00441_T,  GBP_Q6_M00182_T
msc15-k4me3-15_re_56_0.346
CCACGTGGG
3 CBF1_02_M01699_T,  USF1_MA0093.1_J,  PIF3_02_M00435_T
npc15-k27ac-8_re_5_0.425
ACGTGGCCT
0
npc15-k27ac-9_re_6_0.426
CACGTGGCC
16 ABF1_02_M00400_T,  ABF_Q2_M00442_T,  GBF_Q2_M00441_T,  PIF3_01_M00434_T,  Creb3l2_dimeric_1_P,  CG1_Q6_M00440_T,  PIF3_02_M00435_T,  GBP_Q6_M00182_T,  CREB3L1_dimeric_1_P,  CMYC_02_M01154_T
npc15-k27me3-13_re_1_0.389
CACGTGGCCA
9 ABF1_02_M00400_T,  GBF_Q2_M00441_T,  PIF3_02_M00435_T,  PIF3_01_M00434_T,  CG1_Q6_M00440_T,  Creb3l2_dimeric_1_P,  CMYC_02_M01154_T,  GBP_Q6_M00182_T,  EMBP1_Q2_M00366_T
npc15-k4me3-17_re_4_0.351
ACGTGGCCT
0
tro15-k27ac-2_re_70_0.441
CATGTGGCA
4 CREB3L1_dimeric_2_P,  Creb3l2_dimeric_1_P,  CREB3L1_dimeric_1_P,  CREB3L1_dimeric_4_P
tro15-k4me3-11_re_11_0.344
ACGTGGCCCCA
2 ABF_Q2_M00442_T,  ABF1_02_M00400_T
tro17-k4me3-13_h_k9me3_22_0.379
CCACGTGG
14 CREB3L1_dimeric_2_P,  CREB3L1_dimeric_4_P,  Creb3l2_dimeric_1_P,  CREB3L1_dimeric_1_P,  PIF3_02_M00435_T,  MYCMAX_01_M00118_T,  GBF_Q2_M00441_T,  ABF1_02_M00400_T,  mxl-3_PL0007.1_J,  CMYC_02_M01154_T

Target Databases

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Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiTaipaleCmbned.meme 3764 26

Matches to Query: h115-k27ac-11_re_4_0.444

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Summary 

Alignment 

Name BZIP911_01_M00358_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.58526e-05
E-value 0.0596691
q-value 0.0400402
Overlap 8
Offset 4
Orientation Normal
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Summary 

Alignment 

Name PIF3_01_M00434_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.79199e-05
E-value 0.0674506
q-value 0.0400402
Overlap 9
Offset 7
Orientation Reverse Complement
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Summary 

Alignment 

Name XBP1_02_M01770_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.80371e-05
E-value 0.0678918
q-value 0.0400402
Overlap 9
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.52182e-05
E-value 0.0949214
q-value 0.0400402
Overlap 9
Offset 7
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: mes15-k27ac-3_re_3_0.442

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Summary 

Alignment 

Name ABF1_02_M00400_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.46399e-06
E-value 0.00551045
q-value 0.00807206
Overlap 10
Offset 10
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name GBF_Q2_M00441_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.22476e-06
E-value 0.008374
q-value 0.00807206
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.63706e-06
E-value 0.0174539
q-value 0.00821144
Overlap 10
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.29202e-06
E-value 0.0236832
q-value 0.00821144
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.51621e-06
E-value 0.028291
q-value 0.00821144
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_01_M00434_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.96425e-06
E-value 0.0299774
q-value 0.00821144
Overlap 10
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.32649e-05
E-value 0.049929
q-value 0.00821144
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBP_Q6_M00182_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.32649e-05
E-value 0.049929
q-value 0.00821144
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ABF_Q2_M00442_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.58807e-05
E-value 0.0597751
q-value 0.00821144
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EMBP1_Q2_M00366_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.59293e-05
E-value 0.0599578
q-value 0.00821144
Overlap 8
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_4_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.72914e-05
E-value 0.0650847
q-value 0.00821144
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CMYC_02_M01154_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.05754e-05
E-value 0.0774457
q-value 0.00821144
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_2_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.05754e-05
E-value 0.0774457
q-value 0.00821144
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Mycn_MA0104.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.06332e-05
E-value 0.0776635
q-value 0.00821144
Overlap 8
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HY5_01_M01584_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.65444e-05
E-value 0.0999132
q-value 0.00880937
Overlap 9
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: mes15-k27me3-7_re_1_0.416

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Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.60361e-06
E-value 0.00603597
q-value 0.00529506
Overlap 10
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_01_M00434_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.03025e-06
E-value 0.00764185
q-value 0.00529506
Overlap 10
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ABF1_02_M00400_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.18795e-06
E-value 0.00823545
q-value 0.00529506
Overlap 10
Offset 10
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBF_Q2_M00441_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.91901e-06
E-value 0.0109871
q-value 0.00529822
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.42066e-06
E-value 0.0279313
q-value 0.00612763
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.52994e-06
E-value 0.0283427
q-value 0.00612763
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CMYC_02_M01154_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.14516e-05
E-value 0.0431039
q-value 0.00612763
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name USF1_MA0093.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.23453e-05
E-value 0.0464676
q-value 0.00612763
Overlap 7
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBP_Q6_M00182_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.24622e-05
E-value 0.0469077
q-value 0.00612763
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ABF_Q2_M00442_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.38913e-05
E-value 0.0522868
q-value 0.00612763
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name USF_01_M00121_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.39006e-05
E-value 0.052322
q-value 0.00612763
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.47277e-05
E-value 0.0554352
q-value 0.00612763
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name EMBP1_Q2_M00366_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.48629e-05
E-value 0.055944
q-value 0.00612763
Overlap 8
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_4_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.88296e-05
E-value 0.0708747
q-value 0.00612763
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MYCMAX_01_M00118_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.94944e-05
E-value 0.0733768
q-value 0.00612763
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CBF1_02_M01699_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.98055e-05
E-value 0.074548
q-value 0.00612763
Overlap 6
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Mycn_MA0104.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.05357e-05
E-value 0.0772963
q-value 0.00612763
Overlap 8
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_2_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.39431e-05
E-value 0.0901219
q-value 0.00612763
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Myc_MA0147.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.40457e-05
E-value 0.0905079
q-value 0.00612763
Overlap 8
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name HY5_01_M01584_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.59978e-05
E-value 0.0978556
q-value 0.00612763
Overlap 9
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: msc15-k27ac-11_re_35_0.461

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Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.43658e-06
E-value 0.00540729
q-value 0.00206446
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_2_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.61497e-06
E-value 0.00607875
q-value 0.00206446
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.8112e-06
E-value 0.00681737
q-value 0.00206446
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_4_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.8112e-06
E-value 0.00681737
q-value 0.00206446
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.98983e-06
E-value 0.0150177
q-value 0.00323396
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBF_Q2_M00441_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.26991e-06
E-value 0.0235999
q-value 0.00457387
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBP_Q6_M00182_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.82381e-05
E-value 0.0686481
q-value 0.0110872
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: msc15-k4me3-15_re_56_0.346

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Summary 

Alignment 

Name CBF1_02_M01699_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.83715e-05
E-value 0.0691502
q-value 0.0320307
Overlap 6
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name USF1_MA0093.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.11596e-05
E-value 0.0796446
q-value 0.0320307
Overlap 7
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.24516e-05
E-value 0.0845078
q-value 0.0320307
Overlap 9
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: npc15-k27ac-8_re_5_0.425

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Matches to Query: npc15-k27ac-9_re_6_0.426

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Summary 

Alignment 

Name ABF1_02_M00400_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.35627e-07
E-value 0.0008869
q-value 0.00171294
Overlap 9
Offset 10
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name ABF_Q2_M00442_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.97936e-06
E-value 0.00745031
q-value 0.0048572
Overlap 9
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBF_Q2_M00441_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.00443e-06
E-value 0.00754467
q-value 0.0048572
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_01_M00434_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.73343e-06
E-value 0.0140526
q-value 0.00542818
Overlap 9
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.2182e-06
E-value 0.0234053
q-value 0.00720145
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.60558e-06
E-value 0.0323914
q-value 0.00720145
Overlap 9
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.00816e-05
E-value 0.0379471
q-value 0.00720145
Overlap 9
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GBP_Q6_M00182_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.06578e-05
E-value 0.0401161
q-value 0.00720145
Overlap 9
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CREB3L1_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.32709e-05
E-value 0.0499516
q-value 0.00720145
Overlap 9
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CMYC_02_M01154_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.53085e-05
E-value 0.0576213
q-value 0.00720145
Overlap 9
Offset 3
Orientation Normal
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Summary 

Alignment 

Name EMBP1_Q2_M00366_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.54809e-05
E-value 0.0582701
q-value 0.00720145
Overlap 8
Offset 2
Orientation Reverse Complement
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Summary 

Alignment 

Name ABF1_01_M00399_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.79228e-05
E-value 0.0674613
q-value 0.00720145
Overlap 9
Offset 10
Orientation Normal
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Summary 

Alignment 

Name CREB3L1_dimeric_4_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.88957e-05
E-value 0.0711233
q-value 0.00720145
Overlap 9
Offset 3
Orientation Normal
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Summary 

Alignment 

Name HY5_01_M01584_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.17935e-05
E-value 0.0820306
q-value 0.00720145
Overlap 9
Offset 1
Orientation Normal
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Summary 

Alignment 

Name Mycn_MA0104.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.17935e-05
E-value 0.0820306
q-value 0.00720145
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name CREB3L1_dimeric_2_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.32671e-05
E-value 0.0875775
q-value 0.00735413
Overlap 9
Offset 3
Orientation Reverse Complement
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Matches to Query: npc15-k27me3-13_re_1_0.389

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Summary 

Alignment 

Name ABF1_02_M00400_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.54094e-06
E-value 0.00956411
q-value 0.0113001
Overlap 10
Offset 10
Orientation Normal
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Summary 

Alignment 

Name GBF_Q2_M00441_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 5.45457e-06
E-value 0.020531
q-value 0.0113001
Overlap 9
Offset 3
Orientation Normal
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Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 5.64843e-06
E-value 0.0212607
q-value 0.0113001
Overlap 10
Offset 6
Orientation Reverse Complement
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Summary 

Alignment 

Name PIF3_01_M00434_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.06682e-05
E-value 0.040155
q-value 0.0113001
Overlap 10
Offset 6
Orientation Reverse Complement
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Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.33779e-05
E-value 0.0503543
q-value 0.0113001
Overlap 9
Offset 2
Orientation Normal
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Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.39505e-05
E-value 0.0525096
q-value 0.0113001
Overlap 9
Offset 3
Orientation Normal
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Summary 

Alignment 

Name CMYC_02_M01154_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.52467e-05
E-value 0.0573887
q-value 0.0113001
Overlap 9
Offset 3
Orientation Normal
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Summary 

Alignment 

Name GBP_Q6_M00182_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.15872e-05
E-value 0.0812544
q-value 0.0113001
Overlap 9
Offset 3
Orientation Reverse Complement
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Summary 

Alignment 

Name EMBP1_Q2_M00366_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.41141e-05
E-value 0.0907655
q-value 0.0113001
Overlap 8
Offset 2
Orientation Reverse Complement
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Matches to Query: npc15-k4me3-17_re_4_0.351

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Matches to Query: tro15-k27ac-2_re_70_0.441

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Summary 

Alignment 

Name CREB3L1_dimeric_2_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.08052e-05
E-value 0.0406707
q-value 0.0156771
Overlap 9
Offset 3
Orientation Normal
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Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.08052e-05
E-value 0.0406707
q-value 0.0156771
Overlap 9
Offset 3
Orientation Reverse Complement
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Summary 

Alignment 

Name CREB3L1_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.17495e-05
E-value 0.044225
q-value 0.0156771
Overlap 9
Offset 3
Orientation Reverse Complement
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Summary 

Alignment 

Name CREB3L1_dimeric_4_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.17495e-05
E-value 0.044225
q-value 0.0156771
Overlap 9
Offset 3
Orientation Reverse Complement
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Matches to Query: tro15-k4me3-11_re_11_0.344

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Summary 

Alignment 

Name ABF_Q2_M00442_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.75672e-05
E-value 0.0661228
q-value 0.0716279
Overlap 11
Offset 6
Orientation Normal
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Summary 

Alignment 

Name ABF1_02_M00400_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.39221e-05
E-value 0.0900426
q-value 0.0716279
Overlap 11
Offset 11
Orientation Normal
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Matches to Query: tro17-k4me3-13_h_k9me3_22_0.379

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Summary 

Alignment 

Name CREB3L1_dimeric_2_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.622e-06
E-value 0.0136332
q-value 0.00509349
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name CREB3L1_dimeric_4_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.20097e-06
E-value 0.0158125
q-value 0.00509349
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name Creb3l2_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.20097e-06
E-value 0.0158125
q-value 0.00509349
Overlap 8
Offset 2
Orientation Reverse Complement
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Summary 

Alignment 

Name CREB3L1_dimeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.83919e-06
E-value 0.0182147
q-value 0.00509349
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name PIF3_02_M00435_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 9.67837e-06
E-value 0.0364294
q-value 0.00681425
Overlap 8
Offset 4
Orientation Normal
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Summary 

Alignment 

Name MYCMAX_01_M00118_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.14299e-05
E-value 0.0430222
q-value 0.00681425
Overlap 8
Offset 3
Orientation Normal
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Summary 

Alignment 

Name GBF_Q2_M00441_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.29481e-05
E-value 0.0487366
q-value 0.00681425
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name ABF1_02_M00400_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.51234e-05
E-value 0.0569245
q-value 0.00696418
Overlap 8
Offset 9
Orientation Normal
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Summary 

Alignment 

Name mxl-3_PL0007.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.86758e-05
E-value 0.0702958
q-value 0.007001
Overlap 8
Offset 4
Orientation Normal
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Summary 

Alignment 

Name CMYC_02_M01154_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.94101e-05
E-value 0.0730598
q-value 0.007001
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name MXL-3_Cell09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.09046e-05
E-value 0.078685
q-value 0.007001
Overlap 8
Offset 4
Orientation Normal
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Summary 

Alignment 

Name MYC::MAX_MA0059.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.24771e-05
E-value 0.0846039
q-value 0.00713195
Overlap 8
Offset 2
Orientation Normal
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Summary 

Alignment 

Name CG1_Q6_M00440_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.45537e-05
E-value 0.0924203
q-value 0.00713195
Overlap 8
Offset 2
Orientation Reverse Complement
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Summary 

Alignment 

Name EMBP1_Q2_M00366_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.5897e-05
E-value 0.0974765
q-value 0.00713195
Overlap 8
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]
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TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 36.148 seconds
show model parameters...

Explanation of TOMTOM Results

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The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.