TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

 Next Top

Name 

Preview 

Matches 

List 

h1v10msc-k27ac-4_h_k27ac-h1_0.548
GGGGGGGGGG
15 Zfp281_primary_SCI09_U,  MAZR_01_M00491_T,  Zfp740_primary_SCI09_U,  SP1_MA0079.2_J,  ZNF219_01_M01122_T,  ZFP281_01_M01597_T,  ZNF740_monomeric_0_P,  SP1_Q2_01_M00933_T,  UF1H3BETA_Q6_M01068_T,  Zfp740_monomeric_0_P
h1v10tro-k27ac-4_h_k27ac-h1_0.560
CCCCCCCCCC
17 Zfp281_primary_SCI09_U,  ZNF219_01_M01122_T,  MAZR_01_M00491_T,  SP1_MA0079.2_J,  Zfp740_primary_SCI09_U,  ZNF740_monomeric_0_P,  ZNF740_monomeric_1_P,  ZFP281_01_M01597_T,  SP1_Q2_01_M00933_T,  SP1SP3_Q4_M01219_T
msc15-dmv-6_h_11_0.751
GGGGGGGGGGAG
18 ZNF219_01_M01122_T,  SP1_MA0079.2_J,  Zfp281_primary_SCI09_U,  Zfp740_primary_SCI09_U,  SP1_Q2_01_M00933_T,  ZNF740_monomeric_0_P,  ZNF740_monomeric_1_P,  ZFP281_01_M01597_T,  MAZR_01_M00491_T,  SP1_02_M01303_T
npc17-k36me3-1_h_k27ac_16_0.411
GCGGGGGGGG
13 MAZR_01_M00491_T,  ZNF740_monomeric_1_P,  ZNF740_monomeric_0_P,  SP1SP3_Q4_M01219_T,  Zfp281_primary_SCI09_U,  ZNF219_01_M01122_T,  SP1_MA0079.2_J,  Zfp740_monomeric_0_P,  WT1_Q6_M01118_T,  Zfp740_primary_SCI09_U

Target Databases

 Previous Next Top

Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiTaipaleCmbned.meme 3764 24

Matches to Query: h1v10msc-k27ac-4_h_k27ac-h1_0.548

 Previous Next Top

Summary 

Alignment 

Name Zfp281_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 9.11025e-10
E-value 3.4291e-06
q-value 6.81209e-06
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name MAZR_01_M00491_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.66662e-07
E-value 0.00175651
q-value 0.0011919
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.78201e-07
E-value 0.00179995
q-value 0.0011919
Overlap 10
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_MA0079.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.57789e-07
E-value 0.00247592
q-value 0.00122964
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF219_01_M01122_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.98142e-07
E-value 0.00338061
q-value 0.00134315
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZFP281_01_M01597_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.53965e-06
E-value 0.00955926
q-value 0.003165
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.1019e-06
E-value 0.0229675
q-value 0.00651804
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q2_01_M00933_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.87852e-06
E-value 0.0296547
q-value 0.00724049
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UF1H3BETA_Q6_M01068_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.71486e-06
E-value 0.0328027
q-value 0.00724049
Overlap 10
Offset 3
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.18757e-05
E-value 0.0447
q-value 0.00784669
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_02_M01303_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.24875e-05
E-value 0.0470031
q-value 0.00784669
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name GPD1_4_H
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.25927e-05
E-value 0.0473988
q-value 0.00784669
Overlap 8
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.50621e-05
E-value 0.0566937
q-value 0.00866347
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1SP3_Q4_M01219_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.86138e-05
E-value 0.0700625
q-value 0.00994164
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RREB1_MA0073.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.0455e-05
E-value 0.0769927
q-value 0.0101967
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: h1v10tro-k27ac-4_h_k27ac-h1_0.560

 Previous Next Top

Summary 

Alignment 

Name Zfp281_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.26526e-08
E-value 4.76245e-05
q-value 9.46723e-05
Overlap 10
Offset 2
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF219_01_M01122_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.26594e-07
E-value 0.000476501
q-value 0.000420992
Overlap 10
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MAZR_01_M00491_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.68793e-07
E-value 0.000635335
q-value 0.000420992
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_MA0079.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.42237e-07
E-value 0.00128818
q-value 0.00064019
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 5.84337e-07
E-value 0.00219944
q-value 0.00087445
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 9.50592e-07
E-value 0.00357803
q-value 0.00118545
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.49827e-06
E-value 0.0056395
q-value 0.00142807
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZFP281_01_M01597_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.52686e-06
E-value 0.0057471
q-value 0.00142807
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q2_01_M00933_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.81717e-06
E-value 0.0106038
q-value 0.00215285
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1SP3_Q4_M01219_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.87722e-06
E-value 0.0108298
q-value 0.00215285
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.827e-06
E-value 0.0144048
q-value 0.0026032
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name UF1H3BETA_Q6_M01068_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 5.84078e-06
E-value 0.0219847
q-value 0.00364192
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name KROX_Q6_M00982_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.41231e-06
E-value 0.0316639
q-value 0.00484187
Overlap 10
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP4_Q5_M01273_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.13057e-05
E-value 0.0425546
q-value 0.00604241
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q6_M00196_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.30113e-05
E-value 0.0489745
q-value 0.0064464
Overlap 10
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q4_01_M00932_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.37846e-05
E-value 0.0518854
q-value 0.0064464
Overlap 10
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_02_M01303_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.57685e-05
E-value 0.0593525
q-value 0.00694036
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: msc15-dmv-6_h_11_0.751

 Previous Next Top

Summary 

Alignment 

Name ZNF219_01_M01122_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.77327e-08
E-value 0.000104386
q-value 0.000207368
Overlap 12
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_MA0079.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.93967e-07
E-value 0.000730092
q-value 0.000725183
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp281_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.07974e-06
E-value 0.00406415
q-value 0.00269122
Overlap 12
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.91946e-06
E-value 0.00722484
q-value 0.00307172
Overlap 12
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q2_01_M00933_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.22722e-06
E-value 0.00838326
q-value 0.00307172
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.7211e-06
E-value 0.0102422
q-value 0.00307172
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.10717e-06
E-value 0.0116954
q-value 0.00307172
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZFP281_01_M01597_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.57498e-06
E-value 0.0134562
q-value 0.00307172
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name MAZR_01_M00491_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.69721e-06
E-value 0.0139163
q-value 0.00307172
Overlap 12
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_02_M01303_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.52194e-06
E-value 0.0283126
q-value 0.00562445
Overlap 11
Offset -1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name KROX_Q6_M00982_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.06448e-05
E-value 0.0400671
q-value 0.00703622
Overlap 12
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name PDLIM5_8_H
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.1292e-05
E-value 0.0425031
q-value 0.00703622
Overlap 6
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP4_Q5_M01273_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.52813e-05
E-value 0.0575188
q-value 0.00878956
Overlap 11
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.86134e-05
E-value 0.0700609
q-value 0.00943422
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ASCC1_5_H
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.89255e-05
E-value 0.0712356
q-value 0.00943422
Overlap 6
Offset -6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1SP3_Q4_M01219_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.09867e-05
E-value 0.078994
q-value 0.00980786
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name CKROX_Q2_M01175_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.47199e-05
E-value 0.0930457
q-value 0.0107819
Overlap 9
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q4_01_M00932_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.59549e-05
E-value 0.0976941
q-value 0.0107819
Overlap 12
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: npc17-k36me3-1_h_k27ac_16_0.411

 Previous Next Top

Summary 

Alignment 

Name MAZR_01_M00491_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.70687e-07
E-value 0.00177166
q-value 0.002653
Overlap 10
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_1_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.1267e-07
E-value 0.00268249
q-value 0.002653
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.15635e-06
E-value 0.0043525
q-value 0.00286976
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1SP3_Q4_M01219_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.47119e-06
E-value 0.00930156
q-value 0.00383464
Overlap 10
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp281_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.57524e-06
E-value 0.00969319
q-value 0.00383464
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZNF219_01_M01122_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.46297e-06
E-value 0.0130346
q-value 0.00408707
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_MA0079.2_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.39162e-06
E-value 0.0165301
q-value 0.00408707
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_monomeric_0_P
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.39162e-06
E-value 0.0165301
q-value 0.00408707
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name WT1_Q6_M01118_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.28719e-06
E-value 0.023665
q-value 0.00520106
Overlap 9
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp740_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 9.23424e-06
E-value 0.0347577
q-value 0.0068751
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Egr1_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.04484e-05
E-value 0.039328
q-value 0.00707192
Overlap 10
Offset 3
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SP1_Q2_01_M00933_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.12559e-05
E-value 0.0800073
q-value 0.0131879
Overlap 10
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZFP281_01_M01597_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.37541e-05
E-value 0.0894106
q-value 0.0136042
Overlap 10
Offset 1
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]
Previous Next Top
TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 19.315 seconds
show model parameters...

Explanation of TOMTOM Results

 Previous Top

The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.