For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.
If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble,
"Quantifying similarity between motifs",
Genome Biology, 8(2):R24, 2007.
Query Motifs |
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Name |
Preview |
Matches |
List |
h115-k9me3-18_re_55_0.460 |
GGGCAGGGAC
|
0 | |
msc15-k27ac-15_re_39_0.467 |
GGGGCAGGGAT
|
0 | |
npc15-k27ac-38_re_51_0.452 |
GGGCAGGGAT
|
1 | HLCS_2_H |
tro15-k4me3-13_re_50_0.360 |
TGGGCAGGGAT
|
0 |
Target Databases |
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Matches to Query: h115-k9me3-18_re_55_0.460 |
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Matches to Query: msc15-k27ac-15_re_39_0.467 |
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Matches to Query: npc15-k27ac-38_re_51_0.452 |
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Summary |
Alignment |
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Create custom LOGO ↧ | [Query Top] |
Matches to Query: tro15-k4me3-13_re_50_0.360 |
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Explanation of TOMTOM Results |
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The important inputs to TOMTOM.
The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.
The target motifs section lists details on the motif databases that were specifed to search.
The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:
The summary gives the important statistics about the motif match.
The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.
By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.