TOol for Motif TO Motif comparison (TOMTOM)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use TOMTOM in your research, please cite the following paper:
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.

Query Motifs  |  Target Databases  |  Matches  |  Program information  |  Explanation

Query Motifs

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Name 

Preview 

Matches 

List 

h115-k27ac-13_e_19_0.555
AGCGCCGCG
1 STP1_01_M01685_T
h115-k27me3-1_h_2_0.727
CGCGCGCGCG
4 RSC30_01_M01520_T,  Rsc30_GR09_U,  RSC30_MA0375.1_J,  Zfp161_primary_SCI09_U
h115-k4me3-1_e_8_0.841
CGCCGCGCG
0
h117-k27ac-28_e_k27me3_8_0.474
ACGCGCGCG
4 RSC30_MA0375.1_J,  RSC30_01_M01520_T,  Rsc30_GR09_U,  Zfp161_primary_SCI09_U
h117-k27ac-40_e_k4me3_8_0.479
CGCCGCGCGA
0
h117-k27me3-1_h_k27me3_1_0.695
AGCGCGCG
3 RSC3_01_M01551_T,  Rsc3_GR09_U,  RSC30_MA0375.1_J
h117-k4me1-7_e_k27me3_6_0.437
CGCGCCCCG
0
h120-k27me3-15_h_1_0.586
CGCGCGGG
3 RSC30_MA0375.1_J,  RSC30_01_M01520_T,  Rsc30_GR09_U
h120-k27me3-17_h_7_0.568
AAAGCGCGCT
0
h120-k4me3-3_h_7_0.759
CGCGACGTAA
0
h1v10msc-k27me3-1_h_k27me3-h1_0.601
CGCGGCGC
2 STP1_01_M01685_T,  STP1_MA0394.1_J
mes15-dmv-3_e_13_0.812
CGCGCGTGCT
0
mes15-k27ac-11_h_16_0.551
CGCGCCGGCG
0
mes15-k27ac-21_h_28_0.545
GTCGAACGCTCT
0
mes15-k27ac-27_e_5_0.539
CGCGCGCTC
2 RSC3_01_M01551_T,  Rsc3_GR09_U
mes15-k27me3-1_e_3_0.743
CCGCGCGCC
1 ZF5_01_M00716_T
mes15-k4me3-1_e_2_0.847
GCGCGCGCC
8 Zfp161_primary_SCI09_U,  RSC3_01_M01551_T,  Rsc3_GR09_U,  E2F3_primary_SCI09_U,  Rsc30_GR09_U,  RSC30_01_M01520_T,  ZF5_B_M00333_T,  E2F2_primary_SCI09_U
mes17-k27ac-4_e_k4me3_10_0.436,mes17-k9me3-2_e_k4me3_10_0.410
GTCGCCGCGC
0
mes17-k27me3-1_h_k27me3_1_0.743
GCGCGCGCGG
6 RSC30_01_M01520_T,  Rsc30_GR09_U,  RSC30_MA0375.1_J,  Zfp161_primary_SCI09_U,  RSC3_01_M01551_T,  Rsc3_GR09_U
mes17-k4me3-1_h_k27me3_2_0.786
GCGCTACGCG
0
mes20-k9me3-2_re_145_0.410
GCGCCGCGC
0
msc15-dmv-2_h_9_0.813
TCGAAGCGCG
1 POLI_2_H
msc15-k27me3-2_e_5_0.584
CGCGCCGCG
0
msc17-k27me3-17_e_k27me3_53_0.564
ATCGCGGCG
0
msc17-k36me3-19_h_k27me3_1_0.547,msc17-k9me3-1_h_k27me3_1_0.388
CCCGCGCG
6 RSC30_MA0375.1_J,  RSC3_MA0374.1_J,  RSC30_01_M01520_T,  Rsc30_GR09_U,  SUT1_MA0399.1_J,  SUT1_01_M01677_T
msc17-k4me3-1_h_k9me3_25_0.781
CGCGCGGCGC
0
msc20-k27ac-43_re_6_0.452
CCGCGCGCG
4 RSC30_01_M01520_T,  Rsc30_GR09_U,  RSC30_MA0375.1_J,  ZF5_01_M00716_T
npc15-dmv-1_e_3_0.856
CCGCGCGCC
1 ZF5_01_M00716_T
npc15-dmv-2_h_5_0.850
TCGAATCGCG
0
npc15-dmv-3_h_3_0.838
CGGCGCGGAGAA
0
npc15-dmv-4_e_14_0.829
AGCGCGGCG
0
npc15-k27ac-2_h_26_0.592
GCGGCGAC
0
npc15-k27me3-1_e_6_0.818
CGCGCCCCG
0
npc15-k4me3-2_e_2_0.837
GCGCCGCGCG
0
npc15-k4me3-3_h_2_0.828
CGCGACGAAA
0
npc17-k27me3-1_h_k9me3_13_0.602
CGCGGCGCGC
0
npc20-k27me3-8_h_2_0.628
CGCGCTGCGCGC
1 Zfp161_secondary_SCI09_U
npc20-k4me3-1_re_126_0.800
CGCGGCGCC
3 STP1_01_M01685_T,  ODC1_3_H,  STP1_MA0394.1_J
tro15-dmv-3_h_6_0.817
CGTCGCGTTT
0
tro15-k27ac-20_e_58_0.535
GACGCGCT
0
tro15-k27ac-25_e_1_0.531
CGCGCGCCC
4 E2F3_primary_SCI09_U,  E2F2_primary_SCI09_U,  Zfp161_primary_SCI09_U,  RSC30_MA0375.1_J
tro15-k27me3-1_e_3_0.734
CCGCGCGCC
1 ZF5_01_M00716_T
tro15-k4me3-1_e_7_0.844
CGCGCGCCG
0
tro15-k4me3-3_h_8_0.812
TGCGCATGCG
0
tro17-k27me3-1_h_k27me3_1_0.762
CCCCGCGCGC
6 Rsc30_GR09_U,  RSC30_01_M01520_T,  RSC30_MA0375.1_J,  SUT1_MA0399.1_J,  ZF5_01_M00716_T,  SUT1_01_M01677_T
tro17-k9me3-13_e_k27me3_11_0.422
CGCAGCGCG
0
tro17-k9me3-1_e_k4me3_8_0.388
CCGCGCGCG
4 RSC30_01_M01520_T,  Rsc30_GR09_U,  RSC30_MA0375.1_J,  ZF5_01_M00716_T
tro20-k27ac-33_e_6_0.440
CGGCGCCCGGT
0
tro20-k27me3-18_e_1_0.609
CGCGCGCCCC
3 Zfp161_primary_SCI09_U,  ZF5_B_M00333_T,  E2F3_primary_SCI09_U
tro20-k4me3-2_re_89_0.737
CCCGCGCCG
1 CNOT3_01_M01253_T

Target Databases

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Database 

Number of Motifs 

Motifs Matched 

trnsfcJsprUnprobHpdiTaipaleCmbned.meme 3764 19

Matches to Query: h115-k27ac-13_e_19_0.555

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Summary 

Alignment 

Name STP1_01_M01685_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.10959e-05
E-value 0.0794048
q-value 0.118313
Overlap 8
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: h115-k27me3-1_h_2_0.727

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Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.0729e-08
E-value 4.03839e-05
q-value 2.01425e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.0729e-08
E-value 4.03839e-05
q-value 2.01425e-05
Overlap 10
Offset 5
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.32517e-06
E-value 0.0162799
q-value 0.00541335
Overlap 8
Offset -2
Orientation Normal
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Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.74398e-06
E-value 0.0329123
q-value 0.00820792
Overlap 10
Offset 3
Orientation Normal
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Matches to Query: h115-k4me3-1_e_8_0.841

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Matches to Query: h117-k27ac-28_e_k27me3_8_0.474

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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.97011e-06
E-value 0.00741548
q-value 0.00806411
Overlap 8
Offset -1
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.29539e-06
E-value 0.0161679
q-value 0.00806411
Overlap 9
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.29539e-06
E-value 0.0161679
q-value 0.00806411
Overlap 9
Offset 4
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.28147e-05
E-value 0.0858745
q-value 0.0342656
Overlap 9
Offset 4
Orientation Reverse Complement
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Matches to Query: h117-k27ac-40_e_k4me3_8_0.479

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Matches to Query: h117-k27me3-1_h_k27me3_1_0.695

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Summary 

Alignment 

Name RSC3_01_M01551_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.65131e-06
E-value 0.00997955
q-value 0.0099764
Overlap 8
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc3_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.65131e-06
E-value 0.00997955
q-value 0.0099764
Overlap 8
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.99013e-05
E-value 0.0749083
q-value 0.0299539
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: h117-k4me1-7_e_k27me3_6_0.437

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Matches to Query: h120-k27me3-15_h_1_0.586

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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.18459e-06
E-value 0.0082228
q-value 0.0163987
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.03342e-05
E-value 0.0765381
q-value 0.0568256
Overlap 8
Offset 7
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.27104e-05
E-value 0.0854821
q-value 0.0568256
Overlap 8
Offset 7
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: h120-k27me3-17_h_7_0.568

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Matches to Query: h120-k4me3-3_h_7_0.759

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Matches to Query: h1v10msc-k27me3-1_h_k27me3-h1_0.601

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Summary 

Alignment 

Name STP1_01_M01685_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.44498e-06
E-value 0.0317869
q-value 0.0444373
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name STP1_MA0394.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.1827e-05
E-value 0.0445167
q-value 0.0444373
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: mes15-dmv-3_e_13_0.812

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Matches to Query: mes15-k27ac-11_h_16_0.551

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Matches to Query: mes15-k27ac-21_h_28_0.545

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Matches to Query: mes15-k27ac-27_e_5_0.539

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Summary 

Alignment 

Name RSC3_01_M01551_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.87112e-06
E-value 0.0145709
q-value 0.0145709
Overlap 9
Offset 8
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc3_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.87112e-06
E-value 0.0145709
q-value 0.0145709
Overlap 9
Offset 8
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: mes15-k27me3-1_e_3_0.743

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Summary 

Alignment 

Name ZF5_01_M00716_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.09572e-06
E-value 0.0267083
q-value 0.0531716
Overlap 8
Offset 0
Orientation Reverse Complement
Create custom LOGO ↧  [Query Top]

Matches to Query: mes15-k4me3-1_e_2_0.847

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Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.173e-07
E-value 0.00119432
q-value 0.00238437
Overlap 9
Offset 6
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name RSC3_01_M01551_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.59038e-06
E-value 0.0323342
q-value 0.0124302
Overlap 9
Offset 7
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc3_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.59038e-06
E-value 0.0323342
q-value 0.0124302
Overlap 9
Offset 7
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name E2F3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.2655e-05
E-value 0.0476335
q-value 0.0124302
Overlap 9
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.3796e-05
E-value 0.0519283
q-value 0.0124302
Overlap 9
Offset 6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.48873e-05
E-value 0.0560358
q-value 0.0124302
Overlap 9
Offset 6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name ZF5_B_M00333_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.09115e-05
E-value 0.0787111
q-value 0.0145138
Overlap 9
Offset 2
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name E2F2_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.52573e-05
E-value 0.0950686
q-value 0.0145352
Overlap 9
Offset 1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: mes17-k27ac-4_e_k4me3_10_0.436,mes17-k9me3-2_e_k4me3_10_0.410

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Matches to Query: mes17-k27me3-1_h_k27me3_1_0.743

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Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.51451e-08
E-value 5.70061e-05
q-value 5.67826e-05
Overlap 10
Offset 6
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.51451e-08
E-value 5.70061e-05
q-value 5.67826e-05
Overlap 10
Offset 6
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.51795e-06
E-value 0.0170056
q-value 0.00590589
Overlap 8
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 4.72566e-06
E-value 0.0177874
q-value 0.00590589
Overlap 10
Offset 2
Orientation Normal
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RSC3_01_M01551_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.32519e-05
E-value 0.0875202
q-value 0.0188281
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc3_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.51091e-05
E-value 0.0945108
q-value 0.0188281
Overlap 10
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: mes17-k4me3-1_h_k27me3_2_0.786

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Matches to Query: mes20-k9me3-2_re_145_0.410

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Matches to Query: msc15-dmv-2_h_9_0.813

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Summary 

Alignment 

Name POLI_2_H
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.83466e-05
E-value 0.0690567
q-value 0.138113
Overlap 6
Offset -3
Orientation Normal
Create custom LOGO ↧  [Query Top]

Matches to Query: msc15-k27me3-2_e_5_0.584

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Matches to Query: msc17-k27me3-17_e_k27me3_53_0.564

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Matches to Query: msc17-k36me3-19_h_k27me3_1_0.547,msc17-k9me3-1_h_k27me3_1_0.388

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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.11374e-06
E-value 0.0117201
q-value 0.0231346
Overlap 8
Offset 0
Orientation Normal
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name RSC3_MA0374.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.06937e-05
E-value 0.0402512
q-value 0.0231346
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.25641e-05
E-value 0.0472912
q-value 0.0231346
Overlap 8
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.25641e-05
E-value 0.0472912
q-value 0.0231346
Overlap 8
Offset 4
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SUT1_MA0399.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.66308e-05
E-value 0.0625983
q-value 0.0231346
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Next Match] [Query Top]

Summary 

Alignment 

Name SUT1_01_M01677_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.84817e-05
E-value 0.069565
q-value 0.0231346
Overlap 7
Offset -1
Orientation Reverse Complement
Create custom LOGO ↧ [Previous Match] [Query Top]

Matches to Query: msc17-k4me3-1_h_k9me3_25_0.781

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Matches to Query: msc20-k27ac-43_re_6_0.452

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Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.26456e-07
E-value 0.00273438
q-value 0.00312045
Overlap 9
Offset 5
Orientation Reverse Complement
Create custom LOGO ↧  [Next Match] [Query Top]

Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.31951e-07
E-value 0.00313147
q-value 0.00312045
Overlap 9
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.96346e-06
E-value 0.0111545
q-value 0.00444609
Overlap 8
Offset -1
Orientation Normal
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Summary 

Alignment 

Name ZF5_01_M00716_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.57412e-05
E-value 0.0592499
q-value 0.016869
Overlap 8
Offset 0
Orientation Reverse Complement
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Matches to Query: npc15-dmv-1_e_3_0.856

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Summary 

Alignment 

Name ZF5_01_M00716_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.46424e-06
E-value 0.0243314
q-value 0.0484331
Overlap 8
Offset 0
Orientation Reverse Complement
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Matches to Query: npc15-dmv-2_h_5_0.850

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Matches to Query: npc15-dmv-3_h_3_0.838

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Matches to Query: npc15-dmv-4_e_14_0.829

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Matches to Query: npc15-k27ac-2_h_26_0.592

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Matches to Query: npc15-k27me3-1_e_6_0.818

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Matches to Query: npc15-k4me3-2_e_2_0.837

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Matches to Query: npc15-k4me3-3_h_2_0.828

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Matches to Query: npc17-k27me3-1_h_k9me3_13_0.602

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Matches to Query: npc20-k27me3-8_h_2_0.628

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Summary 

Alignment 

Name Zfp161_secondary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 3.49145e-06
E-value 0.0131418
q-value 0.0262836
Overlap 12
Offset 1
Orientation Reverse Complement
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Matches to Query: npc20-k4me3-1_re_126_0.800

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Summary 

Alignment 

Name STP1_01_M01685_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.40392e-05
E-value 0.0528436
q-value 0.0512465
Overlap 8
Offset 0
Orientation Normal
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Summary 

Alignment 

Name ODC1_3_H
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.95252e-05
E-value 0.073493
q-value 0.0512465
Overlap 6
Offset -1
Orientation Normal
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Summary 

Alignment 

Name STP1_MA0394.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.04698e-05
E-value 0.0770483
q-value 0.0512465
Overlap 8
Offset 0
Orientation Normal
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Matches to Query: tro15-dmv-3_h_6_0.817

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Matches to Query: tro15-k27ac-20_e_58_0.535

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Matches to Query: tro15-k27ac-25_e_1_0.531

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Summary 

Alignment 

Name E2F3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.80756e-06
E-value 0.0105676
q-value 0.0172735
Overlap 9
Offset 2
Orientation Reverse Complement
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Summary 

Alignment 

Name E2F2_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 6.98843e-06
E-value 0.0263045
q-value 0.0172735
Overlap 9
Offset 2
Orientation Reverse Complement
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Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.57507e-06
E-value 0.0322766
q-value 0.0172735
Overlap 9
Offset 5
Orientation Normal
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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.90916e-05
E-value 0.0718609
q-value 0.0286739
Overlap 8
Offset 0
Orientation Reverse Complement
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Matches to Query: tro15-k27me3-1_e_3_0.734

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Summary 

Alignment 

Name ZF5_01_M00716_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 7.00946e-06
E-value 0.0263836
q-value 0.0525252
Overlap 8
Offset 0
Orientation Reverse Complement
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Matches to Query: tro15-k4me3-1_e_7_0.844

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Matches to Query: tro15-k4me3-3_h_8_0.812

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Matches to Query: tro17-k27me3-1_h_k27me3_1_0.762

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Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.03567e-06
E-value 0.00766227
q-value 0.00822706
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.20268e-06
E-value 0.00829088
q-value 0.00822706
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.20239e-06
E-value 0.0308738
q-value 0.0136238
Overlap 8
Offset -1
Orientation Normal
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Summary 

Alignment 

Name SUT1_MA0399.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.31423e-05
E-value 0.0494676
q-value 0.0136238
Overlap 7
Offset 0
Orientation Reverse Complement
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Summary 

Alignment 

Name ZF5_01_M00716_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.39225e-05
E-value 0.0524044
q-value 0.0136238
Overlap 8
Offset -2
Orientation Reverse Complement
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Summary 

Alignment 

Name SUT1_01_M01677_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.45904e-05
E-value 0.0549181
q-value 0.0136238
Overlap 7
Offset 0
Orientation Reverse Complement
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Matches to Query: tro17-k9me3-13_e_k27me3_11_0.422

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Matches to Query: tro17-k9me3-1_e_k4me3_8_0.388

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Summary 

Alignment 

Name RSC30_01_M01520_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.15791e-06
E-value 0.00435837
q-value 0.00479688
Overlap 9
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name Rsc30_GR09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.33277e-06
E-value 0.00501655
q-value 0.00479688
Overlap 9
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name RSC30_MA0375.1_J
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.8139e-06
E-value 0.0105915
q-value 0.00479688
Overlap 8
Offset -1
Orientation Normal
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Summary 

Alignment 

Name ZF5_01_M00716_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.31674e-05
E-value 0.0495622
q-value 0.0141259
Overlap 8
Offset 0
Orientation Reverse Complement
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Matches to Query: tro20-k27ac-33_e_6_0.440

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Matches to Query: tro20-k27me3-18_e_1_0.609

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Summary 

Alignment 

Name Zfp161_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 5.525e-06
E-value 0.0207961
q-value 0.0243526
Overlap 10
Offset 5
Orientation Reverse Complement
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Summary 

Alignment 

Name ZF5_B_M00333_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 1.13572e-05
E-value 0.0427486
q-value 0.0283912
Overlap 10
Offset 3
Orientation Reverse Complement
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Summary 

Alignment 

Name E2F3_primary_SCI09_U
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 2.02224e-05
E-value 0.076117
q-value 0.034006
Overlap 10
Offset 2
Orientation Reverse Complement
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Matches to Query: tro20-k4me3-2_re_89_0.737

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Summary 

Alignment 

Name CNOT3_01_M01253_T
Database trnsfcJsprUnprobHpdiTaipaleCmbned.meme
p-value 8.7669e-06
E-value 0.0329986
q-value 0.0657473
Overlap 9
Offset 1
Orientation Normal
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TOMTOM version
4.8.1 (Release date: Tue Feb 7 14:03:40 EST 2012)
Reference
Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Command line summary

Background letter frequencies (from first motif database):
A: 0.295   C: 0.205   G: 0.205   T: 0.295

Result calculation took 155.412 seconds
show model parameters...

Explanation of TOMTOM Results

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The TOMTOM results consist of

Inputs

The important inputs to TOMTOM.

Query Motifs

The query motifs section lists the motifs that were searched for in the target databases as well as links to matches found.

Name
The motif name.
Alt. Name
The alternative motif name. This column may be hidden if no query motifs have an alternate name.
Website
A link to a website which has more information on the motif. This column may be hidden if no query motifs have website information.
Preview
The motif preview. On supporting browsers this will display as a motif logo, otherwise the consensus sequence will be displayed.
Matches
The number of significant matches.
List
Links to the first 20 matches
Target Databases

The target motifs section lists details on the motif databases that were specifed to search.

Database
The database name.
Number of Motifs
The number of motifs read from the motif database minus the number that had to be discarded due to conflicting ids.
Motifs Matched
The number of motifs that had a match with at least one of the query motifs.

Matches

The matches section list the group of motifs that match each query motif. For each query-target match the following information is given:

Summary Table

The summary gives the important statistics about the motif match.

Name
The name of the matched motif.
Alt. Name
The alternative name of the matched motif.
p-value
The probability that the match occurred by random chance according to the null model.
E-value
The expected number of false positives in the matches up to this point.
q-value
The minimum False Discovery Rate required to include the match.
Overlap
The number of letters that overlaped in the optimal alignment.
Offset
The offset of the query motif to the matched motif in the optimal alignment.
Orientation
The orientation of the matched motif that gave the optimal alignment. A value of "normal" means that the matched motif is as it appears in the database otherwise the matched motif has been reverse complemented.
Alignment

The image shows the alignment of the two motifs. The matched motif is shown on the top and the query motif is shown on the bottom.

Create custom LOGO

By clicking the link "Create custom LOGO ↧" a form to make custom logos will be displayed. The download button can then be clicked to generate a motif matching the selected specifications.

Image Type
Two image formats, png and eps, are avaliable. The pixel based portable network graphic (png) format is commonly used on the Internet and the Encapsulated PostScript (eps) format is more suitable for publications that might require scaling.
Error bars
Toggle error bars indicating the confidence of a motif based on the number of sites used in its creation.
SSC
Toggle adding pseudocounts for Small Sample Correction.
Flip
Toggle a full reverse complement of the alignment.
Width
Specify the width of the generated motif.
Height
Specify the height of the generated motif.