MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Forebrain_E13.5_H3K4me1_87_34_0.506_8.154989e-36 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.891737 0.108263 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.923 0.077 0.075311 0.898766 0.012896 0.013027 0.900336 0.027217 0.072448 0.0 0.0 0.144255 0.847913 0.007832 0.955643 0.0 0.0 0.044357 0.0 0.987733 0.0 0.012267 0.324203 0.0 0.670949 0.004848 MOTIF Hindbrain_E11.5_H3K4me2_28_46_0.648_1.769591e-312 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.0 0.915178 0.079458 0.005364 0.042573 0.0 0.957427 0.0 0.18076 0.623888 0.051419 0.143933 0.662772 0.0 0.0448 0.292428 0.0 0.057622 0.936545 0.005833 0.823193 0.031685 0.0 0.145122 0.0 0.909375 0.090625 0.0 0.025284 0.020099 0.954617 0.0 MOTIF Hindbrain_E16.5_H3K4me2_22_66_0.627_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.037355 0.83578 0.089891 0.036974 0.045714 0.0 0.930649 0.023637 0.403916 0.50814 0.0 0.087944 0.848747 0.020813 0.094593 0.035847 0.007767 0.079849 0.912384 0.0 0.844787 0.060839 0.057229 0.037145 0.019273 0.978723 0.0 0.002005 0.0 0.07034 0.788395 0.141265 0.013321 0.693175 0.166281 0.127224 MOTIF Midbrain_E11.5_H3K4me2_16_64_0.651_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.017672 0.928816 0.053512 0.0 0.032522 0.050772 0.685039 0.231667 0.257965 0.681352 0.025151 0.035533 0.814822 0.089899 0.069271 0.026007 0.066141 0.04858 0.884672 0.000607 0.798175 0.13675 0.053569 0.011506 0.006907 0.929266 0.063109 0.000719 0.017027 0.021933 0.943343 0.017697 0.0 0.722381 0.0 0.277619 MOTIF Neural-Tube_E14.5_H3K4me2_32_46_0.626_0 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.028314 0.609231 0.09811 0.264345 0.016409 0.0 0.838697 0.144894 0.185667 0.65834 0.110279 0.045715 0.843813 0.03656 0.083836 0.03579 0.037192 0.04434 0.907111 0.011358 0.82989 0.035628 0.093547 0.040934 0.007441 0.96509 0.01378 0.013689 0.188661 0.0 0.808948 0.002392 0.011343 0.80794 0.01625 0.164467 0.0 0.464901 0.240635 0.294464 MOTIF Limb_E13.5_H3K4me3_31_65_0.670_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.012084 0.955302 0.013751 0.018864 0.030448 0.015084 0.954468 0.0 0.0 0.940578 0.029646 0.029776 0.866628 0.045003 0.058088 0.03028 0.0 0.046398 0.953602 0.0 0.834064 0.040917 0.125019 0.0 0.010107 0.694163 0.032971 0.262758 0.090298 0.054297 0.799131 0.056274 0.0 0.359503 0.20488 0.435617 MOTIF Intestine_E14.5_H3K4me3_38_73_0.662_3.161619e-310 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.994519 0.005481 0.0 0.045226 0.021227 0.925904 0.007643 0.105656 0.774807 0.015868 0.103669 0.780286 0.040551 0.0 0.179164 0.010762 0.020647 0.968591 0.0 0.777687 0.05832 0.0 0.163992 0.0 0.853561 0.081986 0.064453 0.312112 0.060763 0.609943 0.017181 0.012735 0.933825 0.0 0.053439 MOTIF Forebrain_E16.5_H3K4me3_48_57_0.607_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.019338 0.759238 0.036109 0.185315 0.228138 0.210795 0.538326 0.022741 0.0 0.866257 0.090834 0.04291 0.866727 0.0 0.050718 0.082555 0.02189 0.014925 0.962809 0.000376 0.76488 0.054493 0.055406 0.125221 0.025585 0.815899 0.069559 0.088957 0.026782 0.074423 0.876698 0.022097 0.005067 0.948012 0.029251 0.01767 MOTIF Hindbrain_E16.5_H3K4me3_44_48_0.615_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.021303 0.695753 0.041212 0.241733 0.030259 0.150083 0.735838 0.08382 0.078496 0.754113 0.115648 0.051742 0.852344 0.024106 0.039649 0.083901 0.0 0.020111 0.978189 0.0017 0.820188 0.028892 0.013393 0.137527 0.006643 0.88086 0.103553 0.008943 0.029946 0.039602 0.787681 0.142771 0.0 0.834191 0.080884 0.084925 MOTIF Limb_E14.5_H3K4me3_48_78_0.630_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.632494 0.034086 0.33342 0.027868 0.08215 0.886199 0.003783 0.0348 0.816479 0.056382 0.092339 0.950717 0.017783 0.009803 0.021698 0.010185 0.031441 0.958373 0.0 0.787697 0.050186 0.053281 0.108836 0.062997 0.900688 0.0 0.036316 0.050317 0.009305 0.693337 0.247041 0.0 0.784718 0.215282 0.0 MOTIF Liver_E15.5_H3K4me3_55_173_0.590_0 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.1 0.1 0.7 0.1 0.1 0.7 0.1 0.1 0.1 0.1 0.7 0.1 0.1 0.1 0.1 0.7 0.1 0.7 0.1 0.1 0.1 0.1 0.1 0.7 0.1 0.1 0.7 0.1 0.1 0.7 0.1 0.1 0.1 0.1 0.7 0.1 0.1 0.1 0.1 0.7 0.1 0.7 0.1 0.1 0.1 0.1 0.1 0.7 MOTIF Forebrain_E16.5_H3K9ac_54_56_0.558_1.021551e-74 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.753551 0.089381 0.060559 0.096509 0.077239 0.027674 0.889636 0.005451 0.033833 0.029823 0.936345 0.0 0.016215 0.726163 0.01294 0.244682 0.026721 0.028179 0.92328 0.02182 0.204511 0.034216 0.352687 0.408586 0.001093 0.973993 0.024914 0.0 0.042932 0.072174 0.0 0.884894 0.003588 0.007031 0.965157 0.024224 0.232626 0.424117 0.094762 0.248495 MOTIF Intestine_E15.5_H3K9ac_43_43_0.592_4.078542e-184 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.022083 0.712859 0.029769 0.235289 0.047566 0.049201 0.889848 0.013385 0.015019 0.859218 0.05548 0.070283 0.89346 0.033592 0.035979 0.036969 0.109195 0.074457 0.810883 0.005465 0.794978 0.0 0.11495 0.090072 0.008915 0.95029 0.036005 0.004789 0.26921 0.038694 0.589455 0.102641 0.0 0.715077 0.045048 0.239875 MOTIF Limb_E15.5_H3K9ac_22_39_0.626_2.866441e-228 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.108776 0.658614 0.0 0.232611 0.048428 0.026806 0.91355 0.011215 0.02113 0.898172 0.053213 0.027485 0.765562 0.050524 0.027465 0.156449 0.010306 0.043402 0.946293 0.0 0.60765 0.0 0.100735 0.291615 0.017516 0.971574 0.005714 0.005196 0.054886 0.033705 0.772088 0.139321 0.0 0.779025 0.043472 0.177503 MOTIF Lung_E14.5_H3K9ac_30_30_0.608_4.231358e-310 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.020448 0.821323 0.093746 0.064483 0.055729 0.021073 0.795912 0.127285 0.131518 0.766707 0.065252 0.036523 0.916156 0.018111 0.02081 0.044923 0.003729 0.077779 0.917812 0.000679 0.725648 0.017606 0.054318 0.202428 0.027508 0.888023 0.025481 0.058988 0.019331 0.0 0.896499 0.08417 0.01368 0.86579 0.0 0.12053 0.084107 0.378557 0.114735 0.422601 MOTIF Midbrain_E16.5_H3K9ac_29_39_0.597_4.33889e-303 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.088501 0.553393 0.059876 0.298229 0.056319 0.063103 0.791955 0.088623 0.286735 0.632721 0.030945 0.049599 0.889424 0.021362 0.064409 0.024805 0.04281 0.064074 0.887257 0.005859 0.897262 0.053971 0.0 0.048767 0.009152 0.971801 0.0 0.019047 0.042188 0.006461 0.93183 0.019521 0.008773 0.954342 0.0 0.036886 MOTIF Stomach_E14.5_H3K9ac_50_69_0.620_1.688849e-252 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.681094 0.0 0.318906 0.066726 0.280939 0.560963 0.091373 0.0 0.888403 0.106897 0.0047 0.68615 0.053911 0.024968 0.234971 0.005238 0.022858 0.970842 0.001062 0.872162 0.028099 0.040927 0.058813 0.0 0.936219 0.058521 0.00526 0.018742 0.0 0.898763 0.082496 0.0 0.83113 0.159904 0.008966