MEME version 4

ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25

MOTIF	Limb_E12.5_H3K9me3_62_179_0.524_9.18145e-46
letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1
0.001	0.997	0.001	0.001
0.997	0.001	0.001	0.001
0.997	0.001	0.001	0.001
0.997	0.001	0.001	0.001
0.001	0.667	0.201	0.131
0.997	0.001	0.001	0.001
0.001	0.001	0.997	0.001
0.001	0.001	0.001	0.997

MOTIF	Forebrain_E16.5_H3K9me3_16_111_0.532_5.716204e-17
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.856697	0.010413	0.015233	0.117656
0.344613	0.637143	0.016468	0.001776
0.957417	0.037714	0.003243	0.001626
0.0	0.877346	0.037449	0.085206
0.814791	0.046733	0.084749	0.053726
0.0	0.0	0.964506	0.035494
0.030188	0.0	0.021837	0.947974
0.029256	0.067827	0.155125	0.747792
0.033306	0.941985	0.0	0.02471

MOTIF	Forebrain_E14.5_H3K9me3_24_173_0.522_1.608889e-10
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.1	0.1	0.7	0.1
0.1	0.1	0.7	0.1
0.7	0.1	0.1	0.1
0.7	0.1	0.1	0.1
0.1	0.7	0.1	0.1
0.1	0.1	0.1	0.7
0.1	0.1	0.7	0.1
0.1	0.1	0.1	0.7
0.1	0.1	0.1	0.7
0.1	0.1	0.1	0.7

MOTIF	Midbrain_E14.5_H3K9me3_42_174_0.520_5.01631e-09
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.1	0.7	0.1	0.1
0.7	0.1	0.1	0.1
0.7	0.1	0.1	0.1
0.7	0.1	0.1	0.1
0.1	0.7	0.1	0.1
0.7	0.1	0.1	0.1
0.1	0.1	0.7	0.1
0.1	0.1	0.1	0.7
0.1	0.1	0.1	0.7
0.1	0.7	0.1	0.1

MOTIF	Lung_E14.5_H3K9me3_41_140_0.521_7.890036e-07
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.245748	0.386592	0.016066	0.351595
0.933706	0.0	0.016909	0.049386
0.897177	0.085637	0.010878	0.006308
0.964498	0.012408	0.0	0.023094
0.0	0.86546	0.08632	0.04822
0.816578	0.045884	0.083015	0.054524
0.086539	0.264837	0.645129	0.003495
0.158887	0.026433	0.01752	0.797161
0.016788	0.001488	0.220582	0.761142
0.026185	0.877593	0.041178	0.055043

MOTIF	Kidney_E16.5_H3K9me3_24_129_0.535_1.445591e-29
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.897755	0.0	0.045289	0.056956
0.738848	0.190183	0.054775	0.016194
0.809531	0.009765	0.180196	0.000507
0.047502	0.841853	0.002046	0.108599
0.872417	0.047426	0.026642	0.053515
0.0	0.043174	0.943132	0.013694
0.031514	0.052651	0.05457	0.861265
0.005628	0.026821	0.283673	0.683877
0.03209	0.902464	0.0	0.065446

MOTIF	Lung_E16.5_H3K9me3_23_133_0.544_1.018772e-39
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.934676	0.027905	0.024067	0.013352
0.872853	0.082665	0.018479	0.026004
0.853936	0.009736	0.136328	0.0
0.012798	0.826813	0.038024	0.122365
0.775774	0.130812	0.072981	0.020433
0.0	0.00345	0.953721	0.042829
0.006234	0.119947	0.010673	0.863146
0.01189	0.002241	0.412416	0.573454
0.001508	0.935306	0.015632	0.047554

MOTIF	Heart_E14.5_H3K9me3_57_104_0.523_1.160942e-22
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.969177	0.0	0.028086	0.002737
0.916648	0.034825	0.04402	0.004508
0.990706	0.0	0.008262	0.001031
0.003792	0.788141	0.02191	0.186157
0.828489	0.103587	0.005582	0.062342
0.0	0.147255	0.826644	0.026101
0.117145	0.064387	0.067027	0.751441
0.037342	0.011865	0.494668	0.456125
0.068004	0.892319	0.01693	0.022747

MOTIF	Intestine_E14.5_H3K9me3_21_105_0.537_1.826515e-17
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.956116	0.024782	0.00469	0.014411
0.85601	0.084614	0.041318	0.018058
0.964438	0.005005	0.028823	0.001734
0.016866	0.890191	0.005899	0.087045
0.84087	0.104779	0.005654	0.048697
0.017356	0.086823	0.895821	0.0
0.007559	0.137185	0.098279	0.756977
0.057473	0.00792	0.282374	0.652233
0.002396	0.962622	0.001964	0.033019

MOTIF	Stomach_E16.5_H3K9me3_24_119_0.534_3.974698e-24
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.967456	0.0	0.006836	0.025708
0.74283	0.024872	0.218979	0.013319
0.921779	0.019072	0.041913	0.017236
0.007589	0.842552	0.014145	0.135713
0.862666	0.106445	0.003517	0.027372
0.004049	0.061435	0.904166	0.030351
0.010557	0.062016	0.057977	0.869451
0.007985	0.005326	0.311764	0.674925
0.050738	0.84427	0.035663	0.069329

MOTIF	Liver_E11.5_H3K9me3_38_117_0.522_4.839699e-07
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.962204	0.0	0.011392	0.026404
0.893565	0.018822	0.087613	0.0
0.688712	0.032638	0.204813	0.073837
0.036867	0.61007	0.348206	0.004857
0.772463	0.11345	0.085823	0.028264
0.039868	0.013499	0.937382	0.009251
0.00673	0.006127	0.002092	0.985051
0.013964	0.006215	0.032889	0.946932
0.009097	0.867652	0.091003	0.032249

MOTIF	Intestine_E16.5_H3K9me3_19_112_0.550_1.119545e-20
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.921662	0.017616	0.026378	0.034345
0.871784	0.084832	0.027596	0.015788
0.828494	0.00191	0.164081	0.005515
0.005367	0.824492	0.094025	0.076116
0.840987	0.067781	0.062151	0.029082
0.023413	0.131658	0.815371	0.029559
0.024411	0.134699	0.013752	0.827138
0.01426	0.015222	0.250147	0.720371
0.105738	0.840781	0.038679	0.014801

MOTIF	Intestine_P0_H3K9me3_11_108_0.540_2.376414e-13
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.890973	0.022204	0.01511	0.071713
0.876637	0.055541	0.039545	0.028277
0.847432	0.00182	0.126342	0.024406
0.012032	0.67691	0.261548	0.04951
0.92447	0.048681	0.017099	0.00975
0.048891	0.013859	0.875536	0.061714
0.009662	0.023441	0.078307	0.888589
0.012033	0.007016	0.153956	0.826996
0.027629	0.851886	0.099977	0.020509

MOTIF	Liver_P0_H3K9me3_12_109_0.539_6.931844e-19
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.932359	0.033647	0.011102	0.022893
0.75944	0.195217	0.037247	0.008096
0.723398	0.009345	0.227116	0.04014
0.0	0.739325	0.159606	0.101069
0.950204	0.011158	0.01473	0.023908
0.057925	0.013155	0.854409	0.074511
0.023433	0.039362	0.057848	0.879357
0.015013	0.027012	0.215488	0.742487
0.075624	0.892563	0.003839	0.027973

MOTIF	Stomach_P0_H3K9me3_3_105_0.550_2.510641e-08
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.71178	0.057991	0.068494	0.161735
0.847258	0.143919	0.006068	0.002756
0.803949	0.020414	0.172614	0.003024
0.008729	0.703765	0.168115	0.11939
0.939627	0.006638	0.036334	0.0174
0.049229	0.044592	0.879668	0.026512
0.027688	0.036712	0.062528	0.873072
0.092026	0.066646	0.059555	0.781773
0.027055	0.970724	0.0	0.002221
0.449614	0.377699	0.142161	0.030527

MOTIF	Limb_E14.5_H3K9me3_12_139_0.535_5.327045e-22
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.719433	0.00979	0.009446	0.261332
0.876971	0.025565	0.064161	0.033304
0.019504	0.913918	0.041155	0.025424
0.035695	0.036769	0.027605	0.899931
0.041898	0.036963	0.901446	0.019693
0.017533	0.10193	0.0	0.880537
0.25412	0.170932	0.033713	0.541235
0.129695	0.012216	0.0	0.858088
0.229506	0.068042	0.673535	0.028917

MOTIF	Liver_P0_H3K9me3_14_106_0.537_1.574987e-18
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.928102	0.060501	0.0	0.011397
0.962186	0.02821	0.00778	0.001824
0.00705	0.958295	0.002982	0.031672
0.040501	0.066433	0.009939	0.883127
0.265207	0.038242	0.674861	0.02169
0.041355	0.137169	0.008027	0.813449
0.021973	0.064669	0.03563	0.877728
0.139585	0.008369	0.001863	0.850183
0.241609	0.01003	0.739186	0.009175

MOTIF	Stomach_P0_H3K9me3_6_134_0.541_5.598749e-06
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.706268	0.293732	0.0	0.0
0.907656	0.02116	0.061264	0.00992
0.020518	0.835845	0.128923	0.014714
0.057469	0.105461	0.0	0.837071
0.082412	0.038473	0.866388	0.012727
0.0	0.008548	0.00317	0.988282
0.194238	0.054694	0.003572	0.747496
0.229669	0.014674	0.0	0.755657
0.027487	0.004899	0.922491	0.045122

MOTIF	Intestine_E16.5_H3K9me3_57_153_0.527_6.155132e-33
letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1
0.001	0.001	0.001	0.997
0.001	0.028	0.005	0.966
0.005	0.891	0.001	0.103
0.004	0.937	0.001	0.058
0.009	0.951	0.001	0.039
0.962	0.028	0.005	0.005
0.997	0.001	0.001	0.001
0.963	0.003	0.033	0.001
0.001	0.929	0.043	0.027
0.994	0.001	0.004	0.001
0.017	0.001	0.981	0.001
0.001	0.017	0.001	0.981

MOTIF	Lung_E14.5_H3K9me3_95_158_0.501_1.566556e-19
letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1
0.001	0.984	0.001	0.014
0.002	0.996	0.001	0.001
0.001	0.002	0.001	0.996
0.001	0.052	0.001	0.946
0.001	0.879	0.001	0.119
0.02	0.858	0.012	0.11
0.02	0.917	0.012	0.051
0.932	0.007	0.012	0.049
0.997	0.001	0.001	0.001
0.997	0.001	0.001	0.001
0.001	0.944	0.016	0.039
0.975	0.012	0.012	0.001