MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Forebrain_P0_H3K9me3_14_157_0.535_4.26158e-27 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.07 0.001 0.877 0.052 0.151 0.048 0.551 0.25 0.342 0.096 0.402 0.16 0.003 0.048 0.901 0.048 0.047 0.341 0.001 0.611 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.026 0.972 0.001 0.001 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.166 0.641 0.027 0.166 MOTIF Hindbrain_E16.5_H3K9me3_37_157_0.527_1.029485e-20 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.01 0.006 0.983 0.001 0.076 0.106 0.812 0.006 0.777 0.006 0.116 0.101 0.035 0.001 0.963 0.001 0.001 0.06 0.001 0.938 0.978 0.001 0.015 0.006 0.997 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.005 0.993 0.001 0.001 0.987 0.006 0.006 0.001 0.993 0.001 0.005 0.001 0.001 0.883 0.001 0.115 MOTIF Midbrain_P0_H3K9me3_12_162_0.536_1.490831e-16 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.095 0.001 0.821 0.083 0.001 0.001 0.03 0.968 0.001 0.031 0.092 0.876 0.013 0.001 0.985 0.001 0.03 0.001 0.968 0.001 0.001 0.001 0.001 0.997 0.053 0.014 0.045 0.888 0.764 0.001 0.205 0.03 0.001 0.797 0.001 0.201 0.046 0.176 0.001 0.777 0.001 0.74 0.092 0.167 0.083 0.89 0.001 0.026 MOTIF Hindbrain_E14.5_H3K9me3_12_154_0.529_2.277587e-44 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.234 0.093 0.664 0.009 0.001 0.034 0.098 0.867 0.001 0.001 0.034 0.964 0.001 0.001 0.991 0.007 0.001 0.001 0.906 0.092 0.001 0.001 0.001 0.997 0.001 0.001 0.022 0.976 0.807 0.001 0.191 0.001 0.001 0.855 0.001 0.143 0.068 0.354 0.05 0.528 0.121 0.656 0.028 0.195 0.008 0.887 0.001 0.104 MOTIF Hindbrain_P0_H3K9me3_9_156_0.532_9.307576e-18 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.032 0.001 0.966 0.001 0.205 0.061 0.565 0.169 0.489 0.042 0.346 0.124 0.108 0.001 0.89 0.001 0.053 0.263 0.001 0.683 0.997 0.001 0.001 0.001 0.985 0.001 0.001 0.013 0.047 0.924 0.001 0.028 0.001 0.997 0.001 0.001 0.967 0.031 0.001 0.001 0.912 0.014 0.06 0.014 0.03 0.744 0.001 0.225 MOTIF Hindbrain_E11.5_H3K9me3_28_163_0.526_1.791489e-05 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.066 0.074 0.766 0.094 0.076 0.147 0.088 0.689 0.029 0.001 0.024 0.946 0.001 0.023 0.975 0.001 0.029 0.037 0.831 0.103 0.029 0.017 0.05 0.904 0.059 0.026 0.083 0.832 0.774 0.057 0.127 0.042 0.001 0.928 0.029 0.042 0.054 0.141 0.03 0.775 0.115 0.719 0.088 0.078 0.074 0.871 0.001 0.054 MOTIF Midbrain_E14.5_H3K9me3_11_159_0.531_6.78957e-31 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.1 0.075 0.774 0.051 0.042 0.036 0.076 0.846 0.016 0.011 0.025 0.948 0.061 0.011 0.895 0.033 0.072 0.014 0.874 0.04 0.03 0.034 0.044 0.892 0.037 0.049 0.047 0.867 0.761 0.032 0.145 0.062 0.009 0.884 0.022 0.085 0.108 0.147 0.038 0.707 0.049 0.669 0.091 0.191 0.052 0.885 0.022 0.041 MOTIF Neural-Tube_E13.5_H3K9me3_39_164_0.529_6.03432e-41 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.064 0.004 0.891 0.041 0.163 0.035 0.643 0.159 0.671 0.022 0.224 0.083 0.055 0.036 0.884 0.025 0.097 0.125 0.018 0.76 0.835 0.038 0.082 0.045 0.92 0.042 0.027 0.011 0.065 0.901 0.004 0.03 0.053 0.873 0.022 0.052 0.934 0.026 0.004 0.036 0.902 0.031 0.022 0.045 0.033 0.788 0.097 0.082 MOTIF Cranio-Facial_E14.5_H3K9me3_80_176_0.514_1.156984e-16 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.001 0.001 0.997 0.001 0.001 0.13 0.001 0.868 0.938 0.001 0.001 0.06 0.997 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.145 0.853 0.001 0.001 MOTIF Forebrain_E11.5_H3K9me3_54_166_0.516_1.674326e-06 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.51 0.001 0.477 0.012 0.422 0.001 0.576 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.997 0.001 0.001 0.001 0.001 0.997 0.001 0.001 MOTIF Heart_P0_H3K9me3_20_179_0.529_3.18022e-17 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.997 0.001 0.146 0.001 0.852 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.997 0.001 0.001 0.001 0.001 0.997 0.001 0.001 MOTIF Midbrain_E11.5_H3K9me3_25_41_0.525_6.757291e-10 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.042881 0.001651 0.94342 0.012048 0.013567 0.043743 0.174326 0.768364 0.968007 0.004889 0.023099 0.004005 0.990975 0.0 0.0 0.009025 0.058374 0.614311 0.247911 0.079405 0.023137 0.884671 0.069382 0.02281 0.962774 0.025441 0.006483 0.005303 0.840511 0.03004 0.121919 0.007529 0.026357 0.74938 0.016719 0.207544 0.350413 0.557903 0.049661 0.042023 MOTIF Hindbrain_E14.5_H3K9me3_20_10_0.526_3.979703e-19 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.082278 0.0 0.917722 0.0 0.045071 0.266568 0.007037 0.681324 0.811809 0.134961 0.051756 0.001474 0.958948 0.003264 0.022286 0.015502 0.006628 0.946192 0.023779 0.023401 0.0 0.912138 0.003383 0.08448 0.93701 0.044725 0.007006 0.011259 0.961329 0.002645 0.012518 0.023508 0.0 0.616344 0.295611 0.088045 MOTIF Hindbrain_P0_H3K9me3_17_16_0.527_8.39774e-13 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.035504 0.005371 0.959125 0.0 0.084726 0.142582 0.036535 0.736157 0.910043 0.024723 0.064587 0.000646 0.982319 0.004505 0.011208 0.001967 0.154082 0.653628 0.090221 0.102069 0.014736 0.833521 0.008636 0.143107 0.929834 0.05496 0.015206 0.0 0.91577 0.005438 0.031162 0.04763 0.048952 0.472102 0.169512 0.309434 MOTIF Forebrain_P0_H3K9me3_15_19_0.533_6.650471e-20 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.104711 0.024023 0.862618 0.008648 0.046152 0.285448 0.045396 0.623004 0.814122 0.164277 0.003997 0.017604 0.911263 0.041146 0.032352 0.015239 0.01995 0.823542 0.103367 0.053141 0.005875 0.916334 0.013363 0.064428 0.954381 0.02298 0.000378 0.02226 0.920631 0.027189 0.0 0.05218 0.037511 0.728799 0.016061 0.21763 MOTIF Hindbrain_E16.5_H3K9me3_30_16_0.529_5.142044e-21 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.167413 0.009188 0.795139 0.028261 0.02223 0.22976 0.0 0.74801 0.72323 0.204839 0.070522 0.00141 0.923873 0.021183 0.049717 0.005227 0.04097 0.926032 0.011409 0.02159 0.016898 0.929638 0.003386 0.050079 0.917416 0.040382 0.019065 0.023138 0.914779 0.044113 0.010579 0.030529 0.006239 0.912821 0.015035 0.065905 MOTIF Neural-Tube_E14.5_H3K9me3_25_77_0.522_1.93006e-08 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.105147 0.057217 0.837636 0.0 0.005176 0.156164 0.019907 0.818753 0.680496 0.186427 0.104216 0.02886 0.893221 0.03572 0.025515 0.045544 0.049442 0.709984 0.137607 0.102967 0.053975 0.928446 0.012855 0.004723 0.928827 0.036714 0.008679 0.02578 0.820493 0.027279 0.057591 0.094637 0.0 0.651715 0.053221 0.295065 MOTIF Lung_E14.5_H3K9me3_42_176_0.521_2.636734e-08 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.001 0.001 0.997 0.001 0.001 0.001 0.222 0.776 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.176 0.674 0.001 0.149 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 MOTIF Midbrain_E13.5_H3K9me3_33_178_0.530_3.255557e-26 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.001 0.001 0.997 0.001 0.114 0.137 0.197 0.552 0.9 0.001 0.098 0.001 0.997 0.001 0.001 0.001 0.001 0.884 0.001 0.114 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 MOTIF Limb_E14.5_H3K9me3_10_178_0.537_1.382092e-20 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.001 0.001 0.997 0.001 0.001 0.128 0.221 0.65 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.812 0.001 0.186 0.001 0.922 0.001 0.076 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 MOTIF Stomach_E14.5_H3K9me3_20_175_0.528_1.551688e-10 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.001 0.001 0.997 0.001 0.001 0.142 0.242 0.615 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.806 0.105 0.088 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.001 0.001 0.001