MEME version 4

ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25

MOTIF	Midbrain_E15.5_H3K9me3_13_73_0.538_9.845104e-30
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.875568	0.045193	0.043393	0.035846
0.0	0.990811	0.0	0.009189
0.597797	0.345392	0.0	0.056811
0.006067	0.976812	0.0	0.017121
0.05372	0.139193	0.008894	0.798193
0.928101	0.0	0.071899	0.0
0.0	0.000551	0.0	0.999449
0.049598	0.0	0.423036	0.527366
0.720547	0.0	0.221211	0.058242

MOTIF	Heart_E13.5_H3K9me3_16_29_0.542_1.657047e-143
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.977375	0.016226	0.006399	0.0
0.96845	0.021972	0.009578	0.0
0.016047	0.130465	0.005662	0.847825
0.85795	0.003967	0.120115	0.017968
0.003317	0.130562	0.853502	0.012619
0.0	0.033213	0.005371	0.961416
0.030952	0.00693	0.909291	0.052827
0.03319	0.60552	0.092821	0.268469
0.011043	0.862987	0.002338	0.123632

MOTIF	Limb_E12.5_H3K9me3_11_56_0.540_1.291923e-121
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.953354	0.045553	0.001093	0.0
0.969625	0.0	0.030375	0.0
0.013538	0.210444	0.0	0.776018
0.933793	0.006273	0.037187	0.022746
0.0	0.068121	0.930175	0.001704
0.025278	0.014927	0.018528	0.941267
0.066879	0.009447	0.897389	0.026285
0.028179	0.348765	0.1797	0.443356
0.0047	0.949683	0.000989	0.044629
0.860215	0.025283	0.114502	0.0

MOTIF	Midbrain_E11.5_H3K9me3_7_84_0.539_1.315649e-16
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.945449	0.023667	0.00628	0.024604
0.938583	0.0	0.027931	0.033486
0.0	0.382013	0.015573	0.602414
0.984534	0.001803	0.005522	0.008142
0.023332	0.0	0.976668	0.0
0.158626	0.008741	0.112688	0.719946
0.076557	0.037605	0.885838	0.0
0.033913	0.157065	0.181871	0.627152
0.0	0.945352	0.0	0.054648

MOTIF	Forebrain_E14.5_H3K9me3_7_61_0.529_3.570571e-26
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.852504	0.047651	0.052206	0.04764
0.926278	0.005515	0.054952	0.013256
0.012304	0.239364	0.005285	0.743047
0.95424	0.006831	0.033731	0.005197
0.002652	0.054193	0.762234	0.18092
0.029434	0.008077	0.021348	0.941141
0.138862	0.014004	0.743956	0.103177
0.045603	0.137641	0.07812	0.738637
0.040517	0.803166	0.041247	0.11507
0.342672	0.139472	0.221332	0.296524

MOTIF	Hindbrain_P0_H3K9me3_7_48_0.534_7.741934e-26
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.871632	0.040299	0.060168	0.027901
0.911081	0.026007	0.062912	0.0
0.052737	0.173006	0.006775	0.767482
0.926481	0.018017	0.032495	0.023007
0.040176	0.157083	0.635518	0.167223
0.023252	0.024918	0.03153	0.920299
0.139561	0.038416	0.801025	0.020998
0.038625	0.077035	0.14829	0.73605
0.013048	0.931444	0.029016	0.026492

MOTIF	Midbrain_E14.5_H3K9me3_4_16_0.538_2.155983e-53
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.85826	0.083124	0.041526	0.017091
0.884508	0.000926	0.112319	0.002246
0.007632	0.186475	0.010639	0.795254
0.84818	0.016483	0.087604	0.047733
0.026337	0.06297	0.786895	0.123797
0.06539	0.008238	0.040702	0.88567
0.043906	0.032933	0.906017	0.017144
0.010084	0.140055	0.144897	0.704965
0.032322	0.863501	0.023991	0.080186
0.471709	0.252595	0.101977	0.173719

MOTIF	Forebrain_E15.5_H3K9me3_18_37_0.534_1.00954e-21
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.929308	0.023602	0.013921	0.033169
0.925964	0.008445	0.038783	0.026808
0.026074	0.134806	0.029147	0.809973
0.83465	0.005223	0.027918	0.132209
0.024405	0.164623	0.757553	0.053418
0.08626	0.021976	0.028194	0.86357
0.04873	0.01496	0.930322	0.005988
0.100973	0.064196	0.090946	0.743885
0.035437	0.758227	0.039603	0.166733

MOTIF	Hindbrain_E15.5_H3K9me3_56_51_0.523_6.052659e-36
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.91289	0.041859	0.023928	0.021322
0.959337	0.002525	0.034717	0.003422
0.027501	0.158516	0.008923	0.805061
0.929403	0.007687	0.017905	0.045005
0.036752	0.154013	0.781321	0.027913
0.038203	0.001046	0.029001	0.931749
0.172316	0.001022	0.783509	0.043154
0.065885	0.065014	0.150115	0.718986
0.006073	0.743951	0.048826	0.20115

MOTIF	Midbrain_E15.5_H3K9me3_29_29_0.530_5.84686e-30
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.899102	0.013334	0.080539	0.007025
0.9762	0.004974	0.012945	0.00588
0.005457	0.198847	0.014575	0.781122
0.957809	0.00332	0.005865	0.033007
0.07564	0.020949	0.752031	0.151381
0.093963	0.006789	0.0	0.899248
0.058724	0.007379	0.933898	0.0
0.05227	0.053186	0.121519	0.773025
0.008759	0.694189	0.027026	0.270027

MOTIF	Hindbrain_E16.5_H3K9me3_3_26_0.542_4.010854e-36
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.947506	0.009143	0.043352	0.0
0.98743	0.01257	0.0	0.0
0.0	0.281887	0.0	0.718113
0.883931	0.01807	0.097999	0.0
0.013983	0.022362	0.874026	0.08963
0.034482	0.006356	0.017235	0.941928
0.070753	0.034273	0.894974	0.0
0.014453	0.218736	0.19862	0.568191
0.017968	0.945955	0.019876	0.016201

MOTIF	Cranio-Facial_E12.5_H3K9me3_8_81_0.536_6.935928e-34
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.82722	0.08238	0.028367	0.062033
0.959706	0.018133	0.020803	0.001357
0.0	0.377844	0.003679	0.618477
0.882872	0.020901	0.081147	0.01508
0.0	0.017122	0.980127	0.00275
0.017751	0.024466	0.026361	0.931422
0.028104	0.007052	0.91074	0.054104
0.034717	0.187076	0.109882	0.668325
0.024616	0.943459	0.016355	0.01557

MOTIF	Neural-Tube_E11.5_H3K9me3_10_68_0.524_2.683395e-10
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.892313	0.072493	0.0	0.035194
0.956541	0.034878	0.008582	0.0
0.02355	0.337927	0.02026	0.618264
0.83329	0.107084	0.058181	0.001445
0.010317	0.110572	0.87111	0.008001
0.052163	0.018702	0.058849	0.870286
0.020172	0.028962	0.923157	0.027709
0.054058	0.216377	0.114537	0.615028
0.003665	0.876816	0.057406	0.062113

MOTIF	Forebrain_E12.5_H3K9me3_17_43_0.532_2.952149e-77
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.92071	0.03294	0.01662	0.029731
0.971171	0.00022	0.023509	0.005101
0.023779	0.252416	0.017205	0.7066
0.841645	0.052064	0.080116	0.026175
0.006045	0.150322	0.780738	0.062896
0.021835	0.006861	0.004924	0.966381
0.031712	0.007705	0.921515	0.039069
0.011205	0.121393	0.20855	0.658852
0.029662	0.927035	0.007755	0.035549

MOTIF	Forebrain_E13.5_H3K9me3_9_33_0.539_6.60266e-81
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.902661	0.068911	0.016608	0.011819
0.984213	0.0	0.015787	0.0
0.008559	0.258382	0.013532	0.719527
0.839411	0.038259	0.092494	0.029836
0.002577	0.138325	0.795051	0.064046
0.029514	0.008899	0.009889	0.951698
0.071009	0.008753	0.88418	0.036057
0.064614	0.163769	0.128236	0.643381
0.015742	0.927907	0.011572	0.044779

MOTIF	Midbrain_E13.5_H3K9me3_9_19_0.538_9.216387e-65
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.945933	0.019781	0.024248	0.010038
0.971741	0.007336	0.01973	0.001193
0.025582	0.234559	0.008773	0.731086
0.814032	0.027519	0.128521	0.029928
0.001513	0.119876	0.841608	0.037003
0.038503	0.020322	0.000684	0.940491
0.085073	0.009042	0.843215	0.062671
0.073068	0.161283	0.120002	0.645647
0.009995	0.973275	0.002279	0.014451

MOTIF	Midbrain_E16.5_H3K9me3_19_22_0.527_7.606085e-41
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.936316	0.058419	0.002211	0.003054
0.946372	0.008121	0.034835	0.010672
0.021329	0.177566	0.052677	0.748427
0.805356	0.013618	0.090436	0.090589
0.00957	0.115329	0.848854	0.026247
0.027399	0.015673	0.001836	0.955092
0.090592	0.004377	0.890445	0.014586
0.045173	0.125602	0.177177	0.652048
0.027053	0.900861	0.014581	0.057504

MOTIF	Neural-Tube_E13.5_H3K9me3_14_12_0.539_1.510705e-77
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.947948	0.044433	0.002098	0.005521
0.891152	0.003686	0.099728	0.005433
0.0	0.237511	0.01084	0.751649
0.864383	0.013644	0.036959	0.085013
0.00326	0.034234	0.961687	0.000818
0.081165	0.019157	0.00949	0.890188
0.131582	0.01269	0.80943	0.046297
0.047946	0.150319	0.238472	0.563264
0.024595	0.859518	0.026657	0.08923

MOTIF	Limb_E15.5_H3K9me3_13_136_0.524_2.61721e-09
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.078606	0.154978	0.072676	0.69374
0.943505	0.0	0.0	0.056495
0.980998	0.003418	0.012123	0.003461
0.0	0.205489	0.043717	0.750794
0.9483	0.0	0.0517	0.0
0.0	0.014965	0.849462	0.135573
0.104231	0.00095	0.039122	0.855697
0.031833	0.035295	0.932872	0.0
0.024054	0.126079	0.107669	0.742198

MOTIF	Midbrain_P0_H3K9me3_14_53_0.534_3.05312e-32
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.803825	0.053763	0.114898	0.027515
0.0	0.937013	0.0	0.062987
0.886979	0.051367	0.004276	0.057378
0.018618	0.935708	0.03664	0.009035
0.005166	0.080447	0.014318	0.900069
0.809477	0.022153	0.151481	0.016889
0.130826	0.006625	0.005171	0.857379
0.016834	0.002041	0.152053	0.829072
0.5171	0.101556	0.354335	0.027009
0.105467	0.740855	0.02089	0.132788

MOTIF	Neural-Tube_E15.5_H3K9me3_17_16_0.533_7.205676e-63
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.545695	0.149472	0.304833	0.0
0.0	0.971072	0.0	0.028928
0.963576	0.0	0.036424	0.0
0.0	0.978878	0.011799	0.009323
0.0	0.03176	0.003853	0.964386
0.925326	0.0	0.074674	0.0
0.0	0.0	0.002539	0.997461
0.017416	0.011512	0.069797	0.901276
0.444919	0.119866	0.424367	0.010847