MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Midbrain_E14.5_H3K4me1_15_152_0.542_1.447267e-119 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.001 0.001 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.997 0.001 0.001 0.729 0.001 0.001 0.269 0.997 0.001 0.001 0.001 0.782 0.001 0.001 0.216 0.001 0.234 0.001 0.764 0.393 0.001 0.605 0.001 MOTIF Forebrain_E13.5_H3K4me1_29_133_0.531_6.684986e-128 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.950252 0.028999 0.020749 0.0 0.0 0.0 0.0 1.0 0.03697 0.041154 0.117159 0.804717 0.293314 0.003393 0.026787 0.676505 0.010862 0.055292 0.923879 0.009966 0.0 0.996222 0.0 0.003778 0.996729 0.0 0.003271 0.0 0.0 0.399656 0.029319 0.571025 0.802656 0.060964 0.086674 0.049706 MOTIF Forebrain_P0_H3K4me1_10_125_0.544_9.516813e-77 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.081006 0.193715 0.15469 0.570589 0.733407 0.220135 0.037682 0.008775 0.040311 0.014453 0.008894 0.936342 0.0 0.0 1.0 0.0 0.0 0.870257 0.097626 0.032118 0.58 0.0 0.005121 0.414879 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 MOTIF Midbrain_E12.5_H3K4me1_14_118_0.545_3.940099e-198 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.095136 0.148479 0.122644 0.633741 0.796369 0.164207 0.033586 0.005839 0.067591 0.014731 0.029694 0.887984 0.006253 0.0 0.991205 0.002542 0.017116 0.904026 0.048879 0.029979 0.664403 0.0 0.0 0.335597 0.908477 0.060672 0.027685 0.003166 1.0 0.0 0.0 0.0 0.0 0.196219 0.013699 0.790082 MOTIF Forebrain_E15.5_H3K4me1_22_139_0.541_1.211083e-157 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.743453 0.053561 0.202985 0.0 0.0 0.0 0.0 1.0 0.003025 0.232853 0.045452 0.718671 0.25056 0.0 0.0 0.74944 0.0 0.03916 0.951655 0.009185 0.006219 0.989973 0.0 0.003808 0.918405 0.003533 0.004056 0.074005 0.0 0.033453 0.070357 0.89619 0.578242 0.206512 0.098186 0.11706 MOTIF Midbrain_E14.5_H3K4me1_13_143_0.542_1.449961e-102 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.594692 0.335089 0.066425 0.003794 0.0 0.0 0.0 1.0 0.004063 0.092546 0.021603 0.881788 0.249139 0.0 0.0 0.750861 0.0 0.0 0.974214 0.025786 0.0 1.0 0.0 0.0 0.919864 0.022857 0.0 0.057279 0.038257 0.04911 0.072847 0.839786 0.603712 0.073066 0.231623 0.091598 MOTIF Hindbrain_E13.5_H3K4me1_37_144_0.526_3.714882e-102 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.322172 0.404501 0.055934 0.217392 0.56258 0.122961 0.311233 0.003226 0.093149 0.022357 0.035972 0.848522 0.002488 0.0 0.997512 0.0 0.004891 0.909365 0.061212 0.024533 0.722017 0.0 0.007255 0.270728 0.618722 0.105072 0.276206 0.0 0.968224 0.0 0.01994 0.011836 0.0 0.028781 0.013547 0.957672 0.0 0.006676 0.91034 0.082983 MOTIF Midbrain_E13.5_H3K4me1_33_138_0.529_5.957425e-95 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.378164 0.294061 0.058027 0.269747 0.670871 0.116497 0.206571 0.006061 0.092532 0.018421 0.057283 0.831764 0.002074 0.009569 0.988357 0.0 0.005772 0.886394 0.078015 0.029819 0.744882 0.0 0.00374 0.251378 0.619734 0.045522 0.329827 0.004917 0.959239 0.01701 0.015085 0.008666 0.006777 0.023383 0.0 0.96984 0.013327 0.012121 0.889766 0.084785 MOTIF Forebrain_E12.5_H3K4me1_25_102_0.533_9.982079e-95 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.854333 0.118637 0.022547 0.004483 0.116494 0.013393 0.022968 0.847145 0.00692 0.005125 0.982784 0.005171 0.018681 0.878841 0.081231 0.021247 0.625965 0.0 0.00214 0.371895 0.842314 0.048089 0.101419 0.008177 0.99813 0.0 0.00187 0.0 0.004736 0.284359 0.020627 0.690279 0.009308 0.008361 0.868368 0.113964 0.527421 0.128808 0.034339 0.309432 0.060381 0.415903 0.178627 0.34509 MOTIF Forebrain_E16.5_H3K4me1_20_106_0.542_1.25726e-116 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.23321 0.369639 0.087597 0.309553 0.854394 0.085981 0.051306 0.008319 0.10841 0.04559 0.006678 0.839321 0.00846 0.002516 0.975683 0.013342 0.016408 0.921693 0.044843 0.017056 0.679555 0.006284 0.002955 0.311207 0.709925 0.030879 0.251351 0.007844 1.0 0.0 0.0 0.0 0.002865 0.212549 0.007761 0.776825 0.000918 0.018078 0.837683 0.14332 0.484287 0.09596 0.209623 0.21013 MOTIF Forebrain_E11.5_H3K4me1_26_123_0.534_1.054786e-75 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.886078 0.067586 0.034889 0.011447 0.085395 0.019383 0.006 0.889222 0.005732 0.015816 0.972736 0.005716 0.016292 0.922098 0.058949 0.002661 0.652826 0.005345 0.016047 0.325782 0.816125 0.055225 0.119036 0.009614 0.992594 0.0 0.007406 0.0 0.0 0.330985 0.003641 0.665374 0.0 0.022209 0.861669 0.116122 MOTIF Forebrain_E13.5_H3K4me1_23_124_0.539_7.956286e-125 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.723594 0.169873 0.100194 0.006339 0.074112 0.017737 0.035338 0.872812 0.006778 0.00633 0.98121 0.005682 0.016251 0.82281 0.116128 0.044811 0.653556 0.009048 0.004247 0.33315 0.773315 0.040642 0.178357 0.007685 0.998886 0.0 0.0 0.001114 0.006334 0.176684 0.013364 0.803619 0.027494 0.008136 0.809229 0.155141 MOTIF Forebrain_E15.5_H3K4me1_25_137_0.539_2.692974e-110 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.835941 0.141097 0.022962 0.0 0.145439 0.017971 0.012825 0.823765 0.007993 0.005072 0.982601 0.004333 0.01817 0.865933 0.067451 0.048447 0.676071 0.010512 0.0 0.313417 0.72684 0.039993 0.223835 0.009332 0.985733 0.0 0.014267 0.0 0.0 0.192588 0.0 0.807412 0.013759 0.009351 0.81117 0.165721 MOTIF Hindbrain_E12.5_H3K4me1_30_136_0.530_2.023473e-82 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.753074 0.06225 0.180234 0.004442 0.121579 0.023671 0.024001 0.83075 0.008482 0.003884 0.985903 0.001731 0.021086 0.872653 0.092561 0.0137 0.729223 0.0 0.006323 0.264454 0.78068 0.046107 0.155756 0.017456 1.0 0.0 0.0 0.0 0.0 0.231789 0.021933 0.746278 0.042822 0.009647 0.900978 0.046554 MOTIF Midbrain_E11.5_H3K4me1_20_112_0.530_2.942975e-48 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.858495 0.069556 0.069713 0.002236 0.113305 0.01167 0.030397 0.844629 0.013149 0.0 0.984606 0.002245 0.023931 0.91952 0.049277 0.007272 0.71962 0.0 0.003902 0.276478 0.803819 0.045197 0.147194 0.00379 0.989803 0.010197 0.0 0.0 0.006999 0.292457 0.016153 0.684391 0.047938 0.022073 0.855715 0.074274 0.411524 0.19564 0.346162 0.046675 MOTIF Midbrain_E16.5_H3K4me1_22_135_0.533_5.760363e-63 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.223959 0.167741 0.110484 0.497816 0.788122 0.181733 0.030145 0.0 0.068201 0.014335 0.006144 0.91132 0.0 0.0 1.0 0.0 0.0 0.916615 0.056565 0.026821 0.616097 0.0 0.008734 0.375169 0.781832 0.006824 0.211344 0.0 0.974753 0.013974 0.011273 0.0 0.010931 0.031948 0.011647 0.945475 0.021172 0.009918 0.84907 0.11984 MOTIF Midbrain_E15.5_H3K4me1_15_125_0.534_4.266536e-93 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.435176 0.120369 0.07709 0.367365 0.812657 0.146079 0.041263 0.0 0.094195 0.026984 0.013243 0.865578 0.005993 0.000279 0.987684 0.006045 0.015024 0.868493 0.089764 0.026718 0.726657 0.0 0.003484 0.269859 0.686868 0.009934 0.294912 0.008286 0.967456 0.019115 0.0 0.01343 0.025813 0.137227 0.016369 0.820591 0.010972 0.01056 0.901457 0.077012 MOTIF Neural-Tube_E12.5_H3K4me1_34_146_0.524_2.905645e-39 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.701768 0.227573 0.070659 0.0 0.080581 0.021513 0.06402 0.833885 0.00706 0.019052 0.96827 0.005618 0.014502 0.865494 0.11359 0.006414 0.735088 0.0 0.0 0.264912 0.698992 0.009968 0.287627 0.003413 1.0 0.0 0.0 0.0 0.0 0.143312 0.019052 0.837636 0.0 0.004023 0.948385 0.047592 MOTIF Forebrain_E14.5_H3K4me1_20_100_0.540_1.575077e-99 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.326613 0.126067 0.08682 0.4605 0.817933 0.132238 0.040786 0.009042 0.089904 0.017296 0.010965 0.881835 0.005466 0.006701 0.987834 0.0 0.015146 0.866785 0.082538 0.035532 0.608999 0.002641 0.0 0.38836 0.922154 0.046886 0.028378 0.002583 1.0 0.0 0.0 0.0 0.0 0.235966 0.01328 0.750754 0.0 0.019719 0.865953 0.114328 MOTIF Hindbrain_E16.5_H3K4me1_23_136_0.533_2.308258e-69 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.753122 0.216457 0.030422 0.0 0.061465 0.056497 0.037812 0.844226 0.006397 0.0 0.989175 0.004429 0.023943 0.848021 0.102698 0.025338 0.747913 0.006055 0.001569 0.244462 0.862441 0.056316 0.073848 0.007396 1.0 0.0 0.0 0.0 0.0 0.247187 0.024208 0.728605 0.0 0.004684 0.946197 0.04912 MOTIF Neural-Tube_E13.5_H3K4me1_20_133_0.534_1.36411e-109 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.779355 0.196586 0.017499 0.006561 0.066765 0.027893 0.026579 0.878763 0.010775 0.000707 0.978866 0.009652 0.023725 0.912846 0.009751 0.053678 0.596487 0.0 0.0 0.403513 0.913395 0.0709 0.0 0.015705 1.0 0.0 0.0 0.0 0.0 0.217329 0.004648 0.778023 0.019418 0.00612 0.880139 0.094323 MOTIF Midbrain_E14.5_H3K4me1_28_121_0.531_3.903082e-58 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.697974 0.094383 0.190281 0.017362 0.070848 0.014147 0.021927 0.893078 0.011924 0.003876 0.982495 0.001705 0.030049 0.878778 0.058013 0.03316 0.641871 0.0 0.0 0.358129 0.884529 0.067831 0.042888 0.004753 0.991711 0.0 0.008289 0.0 0.0 0.265624 0.022056 0.71232 0.020186 0.010487 0.885023 0.084304 0.456532 0.111335 0.370149 0.061984 0.107439 0.332458 0.528176 0.031927 MOTIF Hindbrain_E14.5_H3K4me1_40_135_0.523_3.620806e-42 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.277515 0.088152 0.082488 0.551846 0.608273 0.143584 0.244246 0.003897 0.089454 0.017068 0.018068 0.875409 0.005559 0.002887 0.985979 0.005576 0.01676 0.864014 0.105586 0.01364 0.705875 0.0 0.015511 0.278614 0.795032 0.124558 0.06886 0.011551 1.0 0.0 0.0 0.0 0.0 0.226346 0.012101 0.761552 0.011682 0.006967 0.908513 0.072838 MOTIF Neural-Tube_E14.5_H3K4me1_39_135_0.523_6.040482e-38 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.599188 0.087609 0.302798 0.010405 0.083384 0.026267 0.018968 0.87138 0.011077 0.0 0.984773 0.00415 0.01843 0.886649 0.071247 0.023673 0.733919 0.0 0.0 0.266081 0.796197 0.151634 0.042816 0.009353 1.0 0.0 0.0 0.0 0.0 0.31556 0.0 0.68444 0.013884 0.018129 0.888627 0.07936 MOTIF Midbrain_P0_H3K9ac_68_173_0.544_4.098024e-66 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.029 0.463 0.18 0.329 0.997 0.001 0.001 0.001 0.328 0.001 0.001 0.67 0.001 0.001 0.001 0.997 0.564 0.001 0.001 0.434 0.001 0.001 0.975 0.023 0.001 0.791 0.001 0.207 0.997 0.001 0.001 0.001