MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Liver_E11.5_H3K27me3_34_42_0.519_9.372416e-59 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.107058 0.892942 0.0 0.0 0.09426 0.027208 0.818837 0.059695 0.0 1.0 0.0 0.0 0.0 0.885347 0.114653 0.0 0.468896 0.257626 0.13071 0.142768 0.08449 0.0 0.894166 0.021345 0.0 0.987463 0.0 0.012537 0.0 0.946784 0.038861 0.014354 0.78243 0.121361 0.04777 0.048439 MOTIF Lung_E15.5_H3K4me3_75_46_0.567_1.550774e-166 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.154483 0.70702 0.0 0.138497 0.181112 0.549278 0.25961 0.01 0.023504 0.0 0.895073 0.081423 0.017933 0.936533 0.038247 0.007287 0.0 0.973502 0.026498 0.0 0.765253 0.015213 0.125874 0.09366 0.0 0.026418 0.820673 0.152909 0.010479 0.887137 0.060718 0.041666 0.095603 0.863196 0.005762 0.035438 0.142474 0.3166 0.191533 0.349394 MOTIF Lung_P0_H3K4me3_68_66_0.560_7.847657e-135 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.253943 0.568757 0.03878 0.138519 0.333948 0.650771 0.0 0.015281 0.01995 0.0 0.948693 0.031357 0.009247 0.920282 0.038742 0.031728 0.0 0.926992 0.073008 0.0 0.804014 0.060907 0.061812 0.073267 0.0 0.065074 0.916761 0.018165 0.014573 0.794102 0.071019 0.120306 0.024814 0.942558 0.018583 0.014046 MOTIF Forebrain_E14.5_H3K4me3_77_55_0.531_1.244616e-21 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.0 0.980656 0.004351 0.014992 0.061626 0.609115 0.024084 0.305174 0.032472 0.035768 0.86716 0.0646 0.022679 0.90125 0.067373 0.008698 0.0 0.946372 0.053628 0.0 0.887171 0.010242 0.039206 0.063381 0.0 0.055083 0.733052 0.211865 0.0 0.961098 0.03254 0.006363 0.00611 0.633629 0.021214 0.339047 0.362754 0.16221 0.253155 0.221881 0.0 0.140407 0.249184 0.610409 MOTIF Forebrain_E16.5_H3K4me3_74_53_0.543_5.818581e-60 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.051219 0.819546 0.050223 0.079011 0.18211 0.648961 0.054458 0.114471 0.129886 0.120548 0.694821 0.054746 0.02995 0.889427 0.055573 0.02505 0.000833 0.962414 0.036524 0.000228 0.870343 0.023779 0.033078 0.0728 0.019864 0.068263 0.868168 0.043705 0.008829 0.939036 0.043266 0.008869 0.035668 0.729808 0.032701 0.201824 0.312918 0.221738 0.262014 0.20333 0.010609 0.277089 0.480785 0.231517 MOTIF Kidney_E16.5_H3K4me3_72_45_0.564_7.598716e-176 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.071104 0.72628 0.017218 0.185398 0.064465 0.76225 0.02883 0.144454 0.036612 0.046985 0.779941 0.136463 0.015348 0.938654 0.031887 0.014111 0.0 0.965427 0.034573 0.0 0.669183 0.042414 0.040525 0.247878 0.007563 0.035528 0.802025 0.154884 0.001821 0.946425 0.025587 0.026167 0.012781 0.72238 0.024901 0.239937 0.251731 0.075292 0.456327 0.216649 0.0 0.151722 0.368071 0.480207 MOTIF Midbrain_E13.5_H3K4me3_73_72_0.574_3.658831e-156 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.074917 0.802887 0.028314 0.093882 0.04282 0.600908 0.074034 0.282238 0.036922 0.050398 0.818719 0.093961 0.022422 0.909978 0.048292 0.019307 0.0 0.971656 0.028344 0.0 0.838934 0.056888 0.025977 0.078202 0.0 0.036397 0.683528 0.280075 0.0 0.947058 0.047489 0.005454 0.027719 0.751871 0.014831 0.205579 0.042885 0.349093 0.343661 0.264361 MOTIF Stomach_P0_H3K4me3_89_66_0.543_1.237879e-73 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.153161 0.712674 0.033853 0.100312 0.057446 0.694056 0.030326 0.218172 0.032864 0.026738 0.835661 0.104737 0.020393 0.936209 0.024808 0.01859 0.0 0.970206 0.029794 0.0 0.839019 0.008305 0.048505 0.104172 0.0 0.049228 0.783845 0.166927 0.0 0.929858 0.063982 0.00616 0.082227 0.607329 0.043536 0.266909 0.05899 0.03375 0.311405 0.595854 MOTIF Lung_E16.5_H3K27me3_55_89_0.511_1.306725e-05 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.017992 0.901118 0.08089 0.0 0.162385 0.797385 0.04023 0.0 0.076318 0.480391 0.015821 0.42747 0.035529 0.0 0.899821 0.06465 0.311076 0.600627 0.071065 0.017232 0.0 0.937433 0.062567 0.0 0.815922 0.043267 0.120063 0.020748 0.00439 0.016473 0.967353 0.011784 0.0 1.0 0.0 0.0 MOTIF Kidney_P0_H3K4me2_78_51_0.549_3.828267e-160 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.006578 0.967802 0.02562 0.23995 0.554427 0.01385 0.191773 0.083451 0.677291 0.069482 0.169776 0.043087 0.062804 0.805213 0.088896 0.020916 0.929557 0.029671 0.019856 0.0 0.961522 0.038478 0.0 0.897283 0.020349 0.017912 0.064456 0.0 0.041966 0.800685 0.157349 0.053925 0.878389 0.061233 0.006453 0.205602 0.499192 0.280013 0.015193 MOTIF Midbrain_E11.5_H3K4me2_83_53_0.544_1.325148e-79 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.092157 0.785699 0.085102 0.037042 0.018146 0.884432 0.0 0.097422 0.063857 0.618273 0.011951 0.305919 0.098679 0.061206 0.766807 0.073308 0.024278 0.862535 0.100955 0.012232 0.0 0.943956 0.056044 0.0 0.855674 0.027433 0.026411 0.090482 0.0 0.054789 0.744186 0.201025 0.0 0.991623 0.008377 0.0 0.082776 0.270722 0.252827 0.393675 MOTIF Hindbrain_E11.5_H3K4me2_77_59_0.551_1.277857e-122 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.024912 0.859501 0.025937 0.08965 0.089912 0.624135 0.065864 0.220089 0.028409 0.01922 0.878919 0.073452 0.034264 0.929333 0.030171 0.006232 0.0 0.97161 0.02839 0.0 0.700028 0.040097 0.011308 0.248567 0.009022 0.008922 0.930532 0.051523 0.017989 0.814333 0.158796 0.008882 0.028041 0.703499 0.135406 0.133055 MOTIF Hindbrain_E12.5_H3K4me2_83_83_0.534_4.749127e-103 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.11027 0.714534 0.018838 0.156358 0.06669 0.856569 0.018283 0.058458 0.22241 0.017578 0.641714 0.118298 0.145111 0.837784 0.0 0.017106 0.0 0.948052 0.051948 0.0 0.843599 0.0 0.01455 0.141851 0.0 0.046944 0.898564 0.054492 0.008649 0.935769 0.055582 0.0 0.120365 0.518542 0.050231 0.310862 MOTIF Hindbrain_E16.5_H3K4me2_74_42_0.553_8.350686e-170 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.040108 0.835738 0.063035 0.061119 0.046863 0.722863 0.031069 0.199205 0.126638 0.067535 0.588867 0.21696 0.101184 0.848206 0.03435 0.01626 0.0 0.947815 0.052185 0.0 0.854265 0.021901 0.06491 0.058924 0.003119 0.044258 0.878616 0.074007 0.010935 0.945752 0.03537 0.007943 0.008176 0.659318 0.093965 0.238542 0.159294 0.073457 0.550496 0.216753 MOTIF Limb_E14.5_H3K4me2_80_63_0.538_4.35876e-58 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.19593 0.756537 0.0319 0.015634 0.345373 0.60247 0.023929 0.028229 0.142835 0.096736 0.701819 0.05861 0.017573 0.894916 0.074948 0.012563 0.001376 0.971806 0.026818 0.0 0.897422 0.024311 0.008261 0.070006 0.000207 0.039266 0.874175 0.086352 0.018747 0.866045 0.061335 0.053873 0.021697 0.634316 0.057602 0.286384 0.256193 0.341247 0.389858 0.012703 MOTIF Lung_P0_H3K4me2_65_37_0.544_1.855797e-64 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.071133 0.743656 0.042535 0.142676 0.233619 0.551649 0.035338 0.179395 0.028535 0.045514 0.84837 0.077581 0.029392 0.91335 0.043113 0.014145 0.0 0.977806 0.022194 0.0 0.768369 0.0 0.072582 0.159049 0.00766 0.054377 0.880474 0.057489 0.012939 0.913824 0.043835 0.029402 0.026313 0.700777 0.048907 0.224003 0.162381 0.208846 0.446843 0.18193 0.00802 0.069792 0.556408 0.365779 MOTIF Midbrain_P0_H3K4me2_75_62_0.536_5.922078e-59 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.064258 0.77377 0.0508 0.111173 0.258577 0.703754 0.0 0.03767 0.161968 0.109926 0.637074 0.091032 0.037713 0.919471 0.024056 0.018759 0.009713 0.977153 0.013133 0.0 0.870263 0.02099 0.025422 0.083325 0.018116 0.037528 0.885966 0.058391 0.01581 0.89397 0.065082 0.025138 0.04925 0.69023 0.034459 0.226061 0.254039 0.422885 0.167608 0.155469 0.0 0.032516 0.737351 0.230133 MOTIF Heart_E11.5_H3K9ac_92_74_0.506_0.001623339 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.055927 0.579466 0.309468 0.055139 0.0 0.044313 0.330888 0.624799 0.016795 0.581352 0.009147 0.392706 0.059935 0.849616 0.012093 0.078356 0.223737 0.3616 0.336727 0.077936 0.021811 0.94673 0.008317 0.023142 0.015831 0.965322 0.018847 0.0 0.888393 0.02537 0.026263 0.059973 0.042096 0.031102 0.895412 0.031389 0.034162 0.902073 0.054376 0.009389 0.04675 0.899474 0.017227 0.036549 0.246667 0.092596 0.0 0.660737 MOTIF Hindbrain_E11.5_H3K9ac_70_62_0.544_1.153973e-50 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.959914 0.037762 0.002324 0.081828 0.564426 0.0 0.353746 0.031397 0.04529 0.878765 0.044548 0.009634 0.894534 0.081803 0.014029 0.0 0.986437 0.013563 0.0 0.854979 0.043647 0.043334 0.058041 0.0 0.023291 0.73961 0.237099 0.004581 0.916084 0.073643 0.005691 0.009574 0.549505 0.0 0.440921 0.162948 0.07469 0.447103 0.31526 MOTIF Kidney_P0_H3K9ac_67_81_0.530_1.412962e-26 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.140137 0.771323 0.0 0.08854 0.040273 0.398009 0.05739 0.504327 0.040265 0.014854 0.858005 0.086876 0.040324 0.886316 0.044055 0.029305 0.0 0.945043 0.054957 0.0 0.795273 0.016119 0.009086 0.179522 0.0 0.010701 0.97119 0.018109 0.0 0.982363 0.008291 0.009346 0.015506 0.720152 0.236832 0.02751 MOTIF Lung_E14.5_H3K9ac_64_57_0.546_5.987952e-66 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.112219 0.719839 0.042582 0.125361 0.059938 0.569792 0.125417 0.244853 0.098754 0.043161 0.771522 0.086562 0.017363 0.91101 0.058692 0.012936 0.003592 0.957984 0.038424 0.0 0.828881 0.028903 0.067366 0.074849 0.000114 0.027425 0.838082 0.134379 0.003272 0.971748 0.02498 0.0 0.0507 0.678742 0.024625 0.245934 0.311577 0.02805 0.304955 0.355419 MOTIF Midbrain_E16.5_H3K9ac_91_52_0.530_2.780032e-26 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.059226 0.793434 0.0193 0.128041 0.063019 0.545444 0.108368 0.283168 0.128294 0.098774 0.719688 0.053245 0.02688 0.903838 0.052365 0.016918 0.00123 0.953757 0.044433 0.000579 0.88961 0.006756 0.0124 0.091234 0.0 0.039755 0.840435 0.11981 0.003374 0.941915 0.050139 0.004573 0.02773 0.722731 0.039642 0.209898 0.464082 0.067075 0.26445 0.204393 MOTIF Neural-Tube_E14.5_H3K9ac_78_40_0.531_9.543118e-19 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.0736 0.81436 0.018 0.09404 0.056061 0.673283 0.093989 0.176667 0.159061 0.047693 0.738844 0.054402 0.009131 0.900207 0.078691 0.011971 0.0 0.952074 0.046489 0.001437 0.732686 0.041676 0.054424 0.171213 0.006069 0.035332 0.827729 0.130871 0.012976 0.940085 0.043067 0.003871 0.012777 0.839464 0.047104 0.100655 0.776904 0.037614 0.072433 0.11305 0.012487 0.229427 0.754959 0.003127 MOTIF Limb_E14.5_H3K9ac_67_64_0.558_2.397553e-138 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.008107 0.048251 0.914715 0.028927 0.147245 0.73629 0.006279 0.110187 0.289162 0.477168 0.041408 0.192262 0.018318 0.113897 0.826741 0.041045 0.023907 0.913878 0.029558 0.032657 0.002441 0.930869 0.063226 0.003464 0.837162 0.035523 0.040745 0.08657 0.007765 0.055635 0.795337 0.141263 0.026119 0.913058 0.05199 0.008833 MOTIF Midbrain_E14.5_H3K9ac_57_52_0.566_3.637176e-189 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.157624 0.692638 0.019839 0.129898 0.107513 0.803081 0.017534 0.071872 0.071258 0.01802 0.822056 0.088667 0.014917 0.899313 0.070104 0.015666 0.0 0.954811 0.045189 0.0 0.848804 0.029225 0.024187 0.097784 0.0 0.052998 0.874833 0.072169 0.0 0.749225 0.228959 0.021816 0.10682 0.542308 0.040564 0.310308 0.058561 0.018609 0.590176 0.332654 MOTIF Heart_E15.5_H3K9ac_76_79_0.532_4.346991e-28 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.231247 0.586208 0.059267 0.123279 0.325785 0.564976 0.068005 0.041233 0.030331 0.069975 0.83846 0.061235 0.029224 0.913156 0.042653 0.014967 0.001681 0.957254 0.038275 0.00279 0.889907 0.031261 0.003389 0.075443 0.0 0.030238 0.93229 0.037472 0.014744 0.841561 0.071743 0.071953 0.013873 0.733887 0.028405 0.223836 0.17093 0.029284 0.252241 0.547545 MOTIF Stomach_P0_H3K9ac_81_76_0.526_1.924831e-21 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.147036 0.700414 0.02539 0.12716 0.342416 0.438827 0.03595 0.182807 0.093359 0.035052 0.804813 0.066776 0.040487 0.858204 0.07717 0.024139 0.00218 0.980597 0.017223 0.0 0.896647 0.007808 0.052657 0.042888 0.000438 0.038755 0.916549 0.044258 0.016997 0.817013 0.161488 0.004502 0.028126 0.868349 0.05653 0.046994