MEME version 4

ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25

MOTIF	Forebrain_P0_H3K9me3_81_78_0.513_1.185016e-13
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.78883	0.109757	0.049034	0.052379
0.045715	0.039186	0.878546	0.036553
0.071528	0.024576	0.042569	0.861327
0.116161	0.002905	0.849653	0.031281
0.228304	0.033766	0.69406	0.04387
0.172517	0.737433	0.013066	0.076983
0.879789	0.025608	0.078408	0.016195
0.020965	0.720282	0.227829	0.030924
0.798715	0.025804	0.015751	0.15973

MOTIF	Midbrain_E14.5_H3K9me3_71_51_0.512_4.196687e-08
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.88769	0.035989	0.036313	0.040007
0.091563	0.001232	0.800942	0.106263
0.038226	0.003885	0.089093	0.868796
0.0	0.002852	0.991175	0.005973
0.034009	0.022202	0.89771	0.04608
0.198829	0.636153	0.047317	0.1177
0.815783	0.046016	0.092414	0.045787
0.003521	0.744481	0.160581	0.091416
0.883418	0.021968	0.045712	0.048901

MOTIF	Midbrain_E14.5_H3K9me3_96_25_0.507_2.305836e-11
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.105045	0.124317	0.769009	0.00163
0.002725	0.026433	0.011839	0.959003
0.184255	0.00146	0.73016	0.084125
0.053441	0.67735	0.143055	0.126154
0.0	0.962215	0.00284	0.034945
0.979669	0.008473	0.009775	0.002083
0.067591	0.90054	0.012501	0.019367
0.074916	0.077413	0.04697	0.800701
0.594195	0.090731	0.168429	0.146645

MOTIF	Forebrain_E13.5_H3K9me3_10_103_0.539_4.28838e-59
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.01784	0.036572	0.778205	0.167383
0.834446	0.063401	0.082862	0.019291
0.244475	0.120623	0.598347	0.036555
0.031163	0.036803	0.065856	0.866178
0.120046	0.005289	0.771692	0.102973
0.0	0.000941	0.981425	0.017634
0.828593	0.076433	0.004707	0.090267
0.926859	0.003601	0.0199	0.04964
0.122636	0.813823	0.005647	0.057894

MOTIF	Forebrain_E12.5_H3K9me3_66_69_0.518_1.726956e-39
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.824301	0.072958	0.085023	0.017719
0.012382	0.012532	0.962914	0.012172
0.032801	0.003011	0.121273	0.842914
0.010211	0.007918	0.981871	0.0
0.013282	0.058045	0.920686	0.007986
0.628485	0.275742	0.001316	0.094457
0.759283	0.001504	0.236723	0.00249
0.045445	0.815159	0.051439	0.087957
0.772339	0.0	0.118069	0.109592

MOTIF	Midbrain_E13.5_H3K9me3_41_75_0.528_4.359985e-50
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.794975	0.113704	0.040812	0.050509
0.008689	0.165889	0.810059	0.015364
0.060378	0.005863	0.092758	0.841001
0.020541	0.0	0.979459	0.0
0.008239	0.0	0.982872	0.008889
0.580657	0.318965	0.029801	0.070576
0.798479	0.016274	0.165212	0.020034
0.020685	0.894455	0.051325	0.033535
0.826905	0.014509	0.012926	0.14566

MOTIF	Midbrain_E15.5_H3K9me3_26_92_0.532_5.753194e-25
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.874296	0.028475	0.050924	0.046305
0.050286	0.147266	0.691399	0.111049
0.124857	0.003172	0.192053	0.679918
0.04394	0.014015	0.942045	0.0
0.030952	0.01055	0.949072	0.009426
0.738678	0.151001	0.033246	0.077075
0.833833	0.001764	0.138867	0.025537
0.025856	0.758467	0.028805	0.186871
0.956605	0.006423	0.011462	0.02551

MOTIF	Limb_E15.5_H3K9me3_26_9_0.520_9.841884e-05
letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1
0.063568	0.840021	0.091441	0.00497
0.783567	0.10907	0.04228	0.065083
0.094597	0.05139	0.805599	0.048414
0.033387	0.014913	0.038504	0.913196
0.014184	0.024433	0.959496	0.001886
0.053023	0.17014	0.686942	0.089895
0.881079	0.081904	0.026008	0.011009
0.152587	0.032415	0.79229	0.022708
0.029484	0.849359	0.061729	0.059427
0.719907	0.175353	0.042814	0.061926
0.034243	0.497002	0.389278	0.079477

MOTIF	Lung_P0_H3K9me3_74_6_0.510_0.005406755
letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1
0.042161	0.870668	0.061693	0.025478
0.725624	0.079224	0.019202	0.17595
0.05052	0.032336	0.857096	0.060048
0.053081	0.034692	0.059522	0.852704
0.031943	0.006675	0.899117	0.062265
0.057637	0.114864	0.763317	0.064181
0.851025	0.019294	0.08721	0.042471
0.060264	0.088473	0.783451	0.067812
0.025942	0.841405	0.039352	0.093301
0.718879	0.161594	0.077268	0.042259
0.048825	0.533451	0.19547	0.222254

MOTIF	Heart_E15.5_H3K9me3_80_35_0.512_0.0001018104
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.039836	0.824066	0.123197	0.012902
0.79274	0.041498	0.029071	0.13669
0.073909	0.009653	0.873378	0.04306
0.035435	0.014227	0.029175	0.921163
0.006473	0.039072	0.94863	0.005825
0.063085	0.057455	0.791638	0.087822
0.921487	0.031361	0.009473	0.037679
0.059019	0.109505	0.659986	0.17149
0.162647	0.563722	0.135479	0.138152

MOTIF	Midbrain_P0_H3K9me3_57_8_0.518_3.324357e-06
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.034635	0.836	0.100545	0.02882
0.737381	0.094225	0.016047	0.152346
0.044331	0.088537	0.855809	0.011323
0.176847	0.004284	0.026175	0.792694
0.002018	0.016567	0.972997	0.008418
0.057327	0.09376	0.805771	0.043143
0.897952	0.029478	0.030494	0.042077
0.064132	0.072796	0.79544	0.067631
0.133711	0.618918	0.180185	0.067186

MOTIF	Liver_E15.5_H3K9me3_28_11_0.514_0.001120212
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.103925	0.74794	0.127214	0.020921
0.788267	0.023196	0.161771	0.026767
0.112402	0.011813	0.827459	0.048326
0.0	0.064904	0.006523	0.928573
0.033815	0.012607	0.952594	0.000984
0.096074	0.025705	0.800813	0.077408
0.749773	0.19007	0.049825	0.010332
0.097719	0.0	0.866522	0.035759
0.120346	0.805908	0.0568	0.016947

MOTIF	Neural-Tube_E11.5_H3K9me3_65_3_0.505_0.01227801
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.00713	0.78716	0.191549	0.014161
0.72813	0.168386	0.065721	0.037763
0.213823	0.058318	0.702317	0.025542
0.013355	0.014488	0.04716	0.924998
0.028553	0.018259	0.944118	0.00907
0.12076	0.084441	0.64247	0.152329
0.882564	0.015238	0.098907	0.003291
0.030565	0.011241	0.920031	0.038163
0.018767	0.91377	0.059782	0.007681

MOTIF	Midbrain_E16.5_H3K9me3_75_54_0.512_1.404756e-11
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.710149	0.009686	0.132019	0.148146
0.107864	0.034086	0.858051	0.0
0.015515	0.003849	0.034463	0.946174
0.092582	0.014834	0.865553	0.027031
0.017341	0.023102	0.875626	0.083931
0.845551	0.055222	0.073301	0.025926
0.116494	0.018049	0.833507	0.03195
0.144768	0.69091	0.107007	0.057314
0.742223	0.038462	0.00188	0.217435
0.06539	0.369984	0.292207	0.272419

MOTIF	Forebrain_E16.5_H3K9me3_43_37_0.526_8.432115e-14
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.779299	0.123114	0.039055	0.058532
0.093449	0.205746	0.65389	0.046915
0.036328	0.007983	0.013189	0.9425
0.031842	0.007988	0.945486	0.014685
0.061243	0.10903	0.709049	0.120678
0.898744	0.012811	0.045809	0.042636
0.025298	0.002127	0.961344	0.01123
0.047021	0.767669	0.081639	0.103672
0.741651	0.106634	0.00338	0.148335

MOTIF	Hindbrain_P0_H3K9me3_47_36_0.520_1.507006e-09
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.755263	0.046575	0.085406	0.112756
0.060035	0.160505	0.715047	0.064413
0.043429	0.016776	0.054148	0.885647
0.073917	0.002717	0.901856	0.02151
0.078929	0.074506	0.79069	0.055875
0.916427	0.042349	0.015625	0.025599
0.144564	0.00399	0.842084	0.009362
0.103635	0.666171	0.19698	0.033214
0.880697	0.024863	0.011561	0.082879

MOTIF	Midbrain_P0_H3K9me3_6_11_0.538_4.232057e-25
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.892347	0.031676	0.028279	0.047698
0.044807	0.199605	0.713062	0.042526
0.125337	0.002723	0.034445	0.837494
0.03496	0.005678	0.943312	0.01605
0.076298	0.076547	0.826559	0.020596
0.857409	0.036479	0.087717	0.018396
0.214755	0.008438	0.771481	0.005326
0.105633	0.782378	0.074513	0.037476
0.813053	0.023935	0.027777	0.135235

MOTIF	Neural-Tube_E14.5_H3K9me3_12_18_0.530_9.80138e-08
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.452012	0.232792	0.083197	0.232
0.641626	0.09132	0.20555	0.061504
0.142861	0.056815	0.742201	0.058123
0.081912	0.023902	0.043152	0.851034
0.067768	0.008655	0.90706	0.016517
0.033294	0.203632	0.701535	0.06154
0.884676	0.021993	0.046469	0.046862
0.065651	0.016005	0.9014	0.016943
0.020208	0.890898	0.057367	0.031528
0.829162	0.086441	0.015116	0.069281

MOTIF	Forebrain_E14.5_H3K9me3_76_57_0.510_9.17345e-07
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.701218	0.074392	0.188064	0.036326
0.040021	0.076234	0.802792	0.080954
0.0427	0.01403	0.052283	0.890987
0.022419	0.008008	0.953456	0.016118
0.035063	0.027962	0.91919	0.017785
0.794088	0.08191	0.099376	0.024626
0.224176	0.00533	0.765711	0.004783
0.003426	0.790102	0.163724	0.042748
0.766373	0.017643	0.004285	0.211699

MOTIF	Midbrain_E11.5_H3K9me3_54_79_0.512_3.372443e-07
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.745924	0.098155	0.124604	0.031317
0.05217	0.022967	0.866392	0.05847
0.004961	0.027782	0.115777	0.85148
0.106729	0.0102	0.88307	0.0
0.067299	0.069223	0.732009	0.131468
0.903536	0.039338	0.020317	0.03681
0.203739	0.005609	0.771995	0.018657
0.011726	0.872564	0.078955	0.036755
0.816677	0.003229	0.034095	0.146

MOTIF	Forebrain_E15.5_H3K9me3_51_30_0.521_2.274291e-29
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.70442	0.029661	0.168707	0.097212
0.042716	0.014288	0.91042	0.032576
0.023928	0.00617	0.078034	0.891869
0.051471	0.022245	0.8742	0.052084
0.038241	0.066726	0.87311	0.021923
0.819238	0.049394	0.118416	0.012951
0.241992	0.00726	0.750748	0.0
0.118676	0.797377	0.047663	0.036284
0.884612	0.024946	0.062906	0.027536

MOTIF	Hindbrain_E15.5_H3K9me3_23_41_0.534_1.194415e-20
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.675452	0.049059	0.157362	0.118128
0.037483	0.055293	0.790467	0.116757
0.026238	0.001295	0.04859	0.923877
0.139029	0.014482	0.844791	0.001698
0.045556	0.1179	0.808339	0.028205
0.903516	0.03796	0.058525	0.0
0.146629	0.008499	0.793299	0.051574
0.033592	0.801732	0.045635	0.119041
0.937572	0.026785	0.004722	0.030921

MOTIF	Neural-Tube_E15.5_H3K9me3_28_68_0.528_4.407871e-33
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.763795	0.048197	0.118392	0.069617
0.014344	0.042258	0.844342	0.099056
0.0	0.006135	0.091891	0.901975
0.149381	0.021104	0.829515	0.0
0.038751	0.140109	0.795179	0.025962
0.829776	0.043938	0.126285	0.0
0.283312	0.004878	0.710564	0.001247
0.029271	0.863407	0.035031	0.072291
0.910338	0.01153	0.018341	0.05979

MOTIF	Heart_E15.5_H3K9me3_74_27_0.513_2.035391e-06
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.814681	0.039838	0.10757	0.037911
0.040869	0.048023	0.775464	0.135644
0.04949	0.013744	0.034937	0.901829
0.053487	0.005492	0.93308	0.007941
0.045979	0.025693	0.91204	0.016287
0.82089	0.017409	0.127492	0.03421
0.132939	0.014385	0.833309	0.019367
0.080956	0.847694	0.034798	0.036552
0.720471	0.190377	0.007945	0.081207
0.034687	0.268075	0.245368	0.45187

MOTIF	Limb_E11.5_H3K9me3_43_112_0.520_3.47019e-06
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.905832	0.002336	0.055357	0.036475
0.162422	0.061101	0.747309	0.029168
0.015167	0.036827	0.056398	0.891608
0.086395	0.0	0.905291	0.008314
0.043706	0.011637	0.886861	0.057796
0.950554	0.031183	0.018263	0.0
0.148808	0.0	0.844668	0.006524
0.025916	0.917896	0.056188	0.0
0.569611	0.359355	0.006119	0.064915

MOTIF	Liver_E11.5_H3K9me3_77_72_0.508_0.001854849
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.73993	0.014515	0.045838	0.199717
0.043587	0.053379	0.860752	0.042282
0.014181	0.056641	0.051871	0.877307
0.024202	0.0093	0.896681	0.069816
0.028648	0.025509	0.801743	0.1441
0.820237	0.007143	0.171257	0.001363
0.01464	0.0	0.910999	0.07436
0.046716	0.842628	0.079028	0.031627
0.761912	0.215899	0.017948	0.004241

MOTIF	Kidney_E15.5_H3K9me3_43_95_0.517_4.08627e-07
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.773906	0.010041	0.054551	0.161503
0.139004	0.040112	0.8006	0.020285
0.082496	0.015452	0.049284	0.852768
0.042528	0.01393	0.913462	0.03008
0.013926	0.173543	0.748009	0.064522
0.889008	0.02216	0.032382	0.056451
0.036532	0.039288	0.901583	0.022597
0.025745	0.848939	0.032548	0.092768
0.744872	0.160944	0.016239	0.077945

MOTIF	Lung_E15.5_H3K9me3_18_15_0.522_3.389766e-05
letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1
0.122984	0.312861	0.382647	0.181508
0.760861	0.094158	0.077835	0.067146
0.073654	0.044862	0.814449	0.067035
0.063095	0.028176	0.048223	0.860506
0.047945	0.016731	0.909359	0.025965
0.033969	0.105589	0.797523	0.062919
0.853844	0.026064	0.071166	0.048926
0.085603	0.022609	0.837336	0.054452
0.029931	0.880229	0.044958	0.044882
0.814767	0.075573	0.037661	0.071999

MOTIF	Stomach_E15.5_H3K9me3_35_30_0.518_0.001122602
letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1
0.705252	0.115639	0.042964	0.136146
0.140015	0.046003	0.738737	0.075245
0.028973	0.050898	0.026266	0.893863
0.046996	0.0053	0.900379	0.047325
0.038741	0.044944	0.848732	0.067583
0.856549	0.037096	0.088674	0.017681
0.05182	0.10672	0.796602	0.044858
0.020551	0.895	0.028886	0.055563
0.869004	0.080954	0.008159	0.041883