MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Hindbrain_E13.5_H3K4me2_21_38_0.632_0 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.017474 0.924822 0.057704 0.0 0.876309 0.044062 0.046834 0.032794 0.081385 0.049886 0.868729 0.0 0.853931 0.069076 0.060034 0.016958 0.166595 0.00928 0.469266 0.35486 0.031347 0.9462 0.010173 0.01228 0.012025 0.053302 0.934673 0.0 0.021828 0.947795 0.030376 0.0 0.020154 0.014176 0.826689 0.13898 0.298226 0.048471 0.640373 0.01293 MOTIF Kidney_E14.5_H3K4me2_78_73_0.544_3.502456e-50 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.135341 0.031853 0.761476 0.071331 0.049802 0.860999 0.051881 0.037318 0.9112 0.027341 0.03958 0.021878 0.0 0.033843 0.966157 0.0 0.894169 0.023442 0.052307 0.030082 0.135504 0.024433 0.831177 0.008886 0.088197 0.620895 0.135041 0.155866 0.094311 0.048172 0.820979 0.036537 0.161533 0.701219 0.088079 0.049169 0.003898 0.248181 0.568447 0.179473 0.697023 0.053065 0.074182 0.175731 MOTIF Heart_E16.5_H3K4me2_46_70_0.567_5.655383e-310 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.183592 0.035306 0.710903 0.070198 0.039116 0.851995 0.028049 0.08084 0.892303 0.0 0.069186 0.038511 0.0 0.027055 0.972945 0.0 0.61995 0.051016 0.058074 0.27096 0.143815 0.0 0.856185 0.0 0.061692 0.861856 0.012117 0.064335 0.022753 0.045617 0.863912 0.067718 0.031231 0.896493 0.054875 0.017401 MOTIF Midbrain_E11.5_H3K4me2_72_77_0.567_1.28266e-155 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.122661 0.013373 0.733507 0.130459 0.015205 0.855341 0.076907 0.052547 0.847072 0.080947 0.012042 0.059939 0.00792 0.269666 0.722414 0.0 0.714636 0.056657 0.052221 0.176486 0.05224 0.012628 0.929056 0.006076 0.058499 0.841899 0.085541 0.014061 0.140237 0.0 0.743792 0.115972 0.014997 0.850393 0.080913 0.053696 MOTIF Midbrain_E15.5_H3K4me2_40_52_0.604_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.036246 0.076181 0.697553 0.190021 0.133433 0.74595 0.025146 0.095471 0.792042 0.098646 0.037147 0.072166 0.0 0.067248 0.932752 0.0 0.59776 0.106085 0.0 0.296156 0.003374 0.022201 0.974425 0.0 0.017837 0.890752 0.052367 0.039044 0.11869 0.0 0.874535 0.006774 0.0 0.96107 0.0 0.03893 MOTIF Cranio-Facial_E14.5_H3K4me2_27_37_0.607_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.126975 0.796029 0.0 0.076996 0.807304 0.037503 0.073072 0.082121 0.002531 0.058709 0.938759 0.0 0.782692 0.041397 0.065896 0.110015 0.101572 0.005247 0.834166 0.059015 0.141077 0.796002 0.047323 0.015598 0.026915 0.009513 0.92861 0.034962 0.20451 0.745944 0.037351 0.012195 0.026583 0.024421 0.806349 0.142648 MOTIF Forebrain_E15.5_H3K4me2_50_53_0.584_6.998913e-313 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.071345 0.833259 0.024094 0.071302 0.8338 0.034896 0.062659 0.068645 0.0 0.027167 0.972833 0.0 0.890035 0.0 0.057476 0.052488 0.149763 0.044893 0.805344 0.0 0.262406 0.676772 0.032875 0.027947 0.039487 0.0 0.953412 0.007102 0.064656 0.713812 0.067453 0.154079 0.036783 0.133692 0.783688 0.045836 MOTIF Neural-Tube_E12.5_H3K4me2_50_55_0.575_8.198692e-294 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.020211 0.86301 0.012782 0.103997 0.832632 0.028164 0.125245 0.013958 0.011432 0.067524 0.921045 0.0 0.733532 0.06458 0.014555 0.187333 0.016369 0.035142 0.888911 0.059578 0.280154 0.657061 0.045563 0.017222 0.021496 0.036209 0.92221 0.020086 0.0 0.850882 0.027653 0.121464 0.286946 0.061209 0.582265 0.06958 MOTIF Stomach_E14.5_H3K4me2_80_166_0.548_5.651971e-62 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.903 0.035 0.039 0.023 0.8 0.079 0.096 0.025 0.777 0.082 0.095 0.046 0.053 0.885 0.048 0.014 0.905 0.014 0.05 0.031 0.037 0.11 0.85 0.003 0.928 0.037 0.029 0.006 0.058 0.07 0.851 0.021 0.085 0.774 0.111 0.03 0.095 0.083 0.77 0.052 0.084 0.786 0.076 0.054 0.078 0.059 0.774 0.089 MOTIF Stomach_E15.5_H3K4me2_75_171_0.549_5.317902e-95 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.807 0.086 0.106 0.001 0.764 0.126 0.109 0.001 0.728 0.099 0.13 0.043 0.082 0.778 0.139 0.001 0.881 0.031 0.023 0.065 0.129 0.137 0.733 0.001 0.821 0.078 0.09 0.011 0.12 0.067 0.812 0.001 0.117 0.746 0.082 0.055 0.137 0.116 0.618 0.129 0.111 0.67 0.114 0.105 0.116 0.116 0.645 0.123 MOTIF Liver_E13.5_H3K4me3_2_13_0.715_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.114803 0.710876 0.0 0.174321 0.013385 0.929713 0.027698 0.029203 0.020118 0.030364 0.92711 0.022409 0.008567 0.838904 0.021457 0.131073 0.0 0.012518 0.956827 0.030656 0.022189 0.650031 0.063991 0.263789 0.064 0.117007 0.060483 0.758509 0.0 0.939229 0.060771 0.0 0.0 0.070044 0.847822 0.082134 MOTIF Midbrain_P0_H3K4me3_29_22_0.678_0 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.005649 0.064762 0.911791 0.017798 0.908461 0.010933 0.02131 0.059297 0.131247 0.062374 0.777605 0.028774 0.041831 0.919362 0.025794 0.013012 0.053266 0.101655 0.812744 0.032335 0.11902 0.853128 0.006752 0.0211 0.045565 0.096378 0.83136 0.026698 0.121383 0.024487 0.721938 0.132192 0.211835 0.672645 0.025994 0.089526 0.278612 0.276794 0.0 0.444594 MOTIF Cranio-Facial_E14.5_H3K4me3_19_65_0.687_0 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.0 0.722365 0.0 0.277635 0.068597 0.881325 0.017522 0.032557 0.0 0.035233 0.953784 0.010983 0.305261 0.689926 0.0 0.004813 0.0 0.01839 0.967753 0.013858 0.272882 0.622207 0.0 0.104911 0.068743 0.0 0.0 0.931257 0.0 0.950572 0.049428 0.0 MOTIF Hindbrain_E11.5_H3K4me3_36_16_0.671_3.045446e-309 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.08642 0.761174 0.048755 0.10365 0.049147 0.796183 0.043116 0.111554 0.070432 0.75868 0.046935 0.123953 0.108319 0.05812 0.789237 0.044324 0.101153 0.6561 0.233059 0.009688 0.053427 0.047948 0.859723 0.038901 0.032433 0.854399 0.04959 0.063578 0.073202 0.029532 0.061331 0.835936 0.007715 0.933352 0.048311 0.010622 MOTIF Limb_E11.5_H3K4me3_11_24_0.744_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.053076 0.854628 0.010408 0.081887 0.026674 0.764282 0.045585 0.163459 0.124493 0.039176 0.699331 0.137 0.102425 0.749263 0.10043 0.047883 0.02055 0.0 0.944788 0.034661 0.145825 0.757291 0.085036 0.011847 0.195368 0.014927 0.058021 0.731684 0.0 0.946316 0.040879 0.012805 0.074171 0.0 0.857535 0.068295 MOTIF Midbrain_P0_H3K4me3_10_17_0.739_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.054606 0.8325 0.0 0.112894 0.111163 0.667669 0.097161 0.124006 0.092532 0.022012 0.816074 0.069382 0.092157 0.700587 0.193305 0.013951 0.030054 0.0 0.949598 0.020348 0.076584 0.867042 0.039256 0.017118 0.121322 0.137843 0.022439 0.718396 0.04217 0.877836 0.054072 0.025922 0.046115 0.017842 0.852062 0.083981 MOTIF Stomach_E16.5_H3K4me3_8_22_0.701_3.573125e-313 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.023566 0.95606 0.005436 0.014938 0.029063 0.630048 0.031998 0.308891 0.023026 0.02463 0.836373 0.11597 0.032775 0.918688 0.03395 0.014587 0.096924 0.054569 0.816535 0.031972 0.132275 0.727475 0.046796 0.093455 0.196962 0.022502 0.041848 0.738688 0.006669 0.896319 0.089439 0.007573 0.083793 0.01244 0.841006 0.062761 MOTIF Hindbrain_E14.5_H3K27me3_3_20_0.560_1.798152e-100 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.16726 0.466206 0.205002 0.161532 0.676267 0.043032 0.062545 0.218157 0.103879 0.038319 0.84152 0.016282 0.823223 0.020651 0.051129 0.104997 0.156758 0.030714 0.805243 0.007286 0.018529 0.954273 0.020573 0.006625 0.029885 0.01067 0.947585 0.011861 0.019886 0.935563 0.034039 0.010512 0.03375 0.0 0.942579 0.023671 MOTIF Forebrain_E11.5_H3K27me3_9_27_0.552_1.288268e-69 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.197423 0.723408 0.061929 0.01724 0.816629 0.027228 0.037332 0.118811 0.159773 0.027954 0.737454 0.074818 0.750359 0.065732 0.050765 0.133144 0.094593 0.00499 0.89945 0.000967 0.021102 0.921052 0.043971 0.013874 0.030994 0.0 0.928048 0.040957 0.029431 0.932169 0.015217 0.023183 0.112949 0.037661 0.634472 0.214918 0.11575 0.374268 0.217315 0.292668 MOTIF Hindbrain_P0_H3K27me3_12_18_0.532_1.18878e-21 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.035539 0.83882 0.05287 0.072771 0.873923 0.031758 0.045996 0.048323 0.107626 0.127415 0.701143 0.063815 0.716167 0.077645 0.062123 0.144065 0.082075 0.024602 0.809664 0.083658 0.121113 0.823496 0.023618 0.031773 0.0324 0.039901 0.905786 0.021913 0.034766 0.868806 0.017091 0.079337 0.111829 0.074762 0.752613 0.060795 0.073469 0.323722 0.326213 0.276596 MOTIF Intestine_E16.5_H3K27me3_14_28_0.558_2.562085e-47 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.345351 0.207866 0.190059 0.256724 0.012246 0.926297 0.036938 0.02452 0.830747 0.106453 0.011289 0.05151 0.252686 0.007783 0.735011 0.004521 0.669298 0.071173 0.105419 0.15411 0.202775 0.014094 0.773969 0.009162 0.050592 0.935818 0.007618 0.005972 0.022848 0.064471 0.85718 0.055501 0.0 0.983049 0.0 0.016951 0.014655 0.163266 0.810962 0.011117 MOTIF Cranio-Facial_E13.5_H3K4me3_52_82_0.606_2.004503e-318 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.934498 0.014505 0.0 0.050996 0.0 0.09486 0.90514 0.0 0.891501 0.050639 0.0 0.057859 0.163243 0.0 0.817785 0.018971 0.0 0.988551 0.011449 0.0 0.027943 0.0 0.657765 0.314292 0.00925 0.83724 0.113188 0.040322 0.087546 0.240086 0.649145 0.023223 0.009469 0.039007 0.729482 0.222041 MOTIF Forebrain_E12.5_H3K4me3_61_14_0.587_1.987151e-131 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.0 1.0 0.0 0.0 0.086839 0.082364 0.159378 0.671419 0.159628 0.742523 0.08667 0.011179 0.634792 0.157382 0.033519 0.174307 0.055089 0.066974 0.877937 0.0 0.794735 0.037834 0.026377 0.141054 0.037106 0.031346 0.872592 0.058956 0.171885 0.740386 0.043022 0.044708 0.058893 0.07295 0.787945 0.080211 0.020917 0.830899 0.066948 0.081236 0.252423 0.045259 0.654465 0.047854 0.079118 0.041641 0.833978 0.045263 MOTIF Liver_E11.5_H3K4me3_37_48_0.640_1.031322e-316 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.020185 0.842774 0.019095 0.117946 0.80343 0.024706 0.09399 0.077874 0.0 0.066545 0.933455 0.0 0.551938 0.106995 0.060933 0.280134 0.0122 0.011871 0.961037 0.014892 0.011538 0.902291 0.056622 0.029548 0.010611 0.0 0.793214 0.196176 0.0 0.75737 0.046038 0.196592 0.017607 0.0 0.898575 0.083818 MOTIF Cranio-Facial_E14.5_H3K4me3_32_34_0.662_1.754443e-312 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.018148 0.910549 0.035405 0.035899 0.797023 0.020695 0.09395 0.088332 0.0 0.070457 0.929543 0.0 0.673944 0.117802 0.016682 0.191572 0.03817 0.023191 0.711579 0.22706 0.254282 0.70384 0.013132 0.028745 0.008506 0.031776 0.905313 0.054404 0.034377 0.95686 0.0 0.008763 0.045242 0.034095 0.789336 0.131327 MOTIF Neural-Tube_E14.5_H3K4me3_13_40_0.722_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.782054 0.018267 0.120255 0.079423 0.0 0.046808 0.953192 0.0 0.756422 0.043979 0.061457 0.138142 0.162057 0.021975 0.711517 0.104451 0.036022 0.92584 0.033719 0.004419 0.014586 0.018634 0.956687 0.010093 0.046348 0.783831 0.03784 0.131981 0.025054 0.042395 0.709944 0.222607 0.169268 0.061343 0.648996 0.120393 MOTIF Heart_E16.5_H3K4me3_68_92_0.548_2.337408e-126 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.008725 0.833156 0.048057 0.110061 0.015356 0.890253 0.032654 0.061737 0.87087 0.042678 0.079934 0.006518 0.0 0.068286 0.931714 0.0 0.679316 0.086208 0.046636 0.18784 0.018156 0.024307 0.921082 0.036456 0.068324 0.806507 0.003316 0.121854 0.150319 0.05003 0.775723 0.023927 0.244648 0.682196 0.013329 0.059827 MOTIF Hindbrain_E14.5_H3K4me3_74_63_0.554_9.331872e-126 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.302561 0.385839 0.196367 0.115233 0.015033 0.984967 0.0 0.0 0.845446 0.07735 0.019446 0.057759 0.0 0.05157 0.94843 0.0 0.926276 0.009277 0.013151 0.051296 0.022422 0.137002 0.79394 0.046637 0.028406 0.764901 0.057064 0.149629 0.016644 0.081495 0.787684 0.114177 0.358464 0.434467 0.067031 0.140037 0.006636 0.054623 0.932988 0.005752 MOTIF Kidney_E14.5_H3K4me3_50_55_0.612_1.189534e-317 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.016677 0.890781 0.092542 0.0 0.827487 0.092111 0.023153 0.057249 0.0 0.057691 0.942309 0.0 0.876747 0.036152 0.055406 0.031695 0.018321 0.0 0.86218 0.119499 0.051383 0.844869 0.007369 0.096378 0.013514 0.055092 0.908472 0.022921 0.28129 0.493587 0.080165 0.144958 0.004734 0.268652 0.704034 0.02258 MOTIF Hindbrain_P0_H3K4me3_68_56_0.574_1.324789e-196 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.024758 0.896853 0.03551 0.042879 0.875101 0.059189 0.01585 0.04986 0.004957 0.057187 0.936659 0.001196 0.872454 0.075984 0.021765 0.029798 0.140882 0.019772 0.79423 0.045116 0.049137 0.849482 0.052493 0.048888 0.180613 0.076136 0.671538 0.071713 0.075857 0.674335 0.129504 0.120303 0.147516 0.182023 0.662758 0.007703 0.286995 0.351278 0.0 0.361726 MOTIF Stomach_E14.5_H3K4me3_59_66_0.609_2.903433e-315 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.051169 0.906439 0.042392 0.0 0.914139 0.083503 0.0 0.002358 0.0 0.090276 0.901293 0.008432 0.836764 0.017231 0.078555 0.06745 0.135876 0.118189 0.738074 0.007861 0.04026 0.927685 0.02144 0.010615 0.007542 0.072237 0.761074 0.159147 0.003662 0.733877 0.078806 0.183655 0.181338 0.036393 0.654691 0.127579