MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Forebrain_E13.5_H3K9me3_37_127_0.528_1.537304e-32 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.835124 0.071731 0.054789 0.038356 0.024235 0.025095 0.02012 0.930551 0.010442 0.0 0.981653 0.007905 0.982261 0.012756 0.0 0.004983 0.031968 0.011087 0.035842 0.921104 0.655899 0.002238 0.3298 0.012063 0.680116 0.011669 0.001809 0.306405 0.033635 0.021619 0.0 0.944746 0.149109 0.060991 0.729066 0.060835 0.287271 0.125256 0.284056 0.303417 MOTIF Liver_E12.5_H3K9me3_40_60_0.516_4.459458e-39 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.126855 0.195481 0.677664 0.0 0.942133 0.048805 0.009062 0.0 0.000905 0.087049 0.004483 0.907563 0.003652 0.0 0.993965 0.002383 0.984574 0.009157 0.006269 0.0 0.0741 0.057445 0.053937 0.814518 0.490846 0.018052 0.491102 0.0 0.979819 0.020181 0.0 0.0 0.003179 0.051953 0.00042 0.944449 MOTIF Cranio-Facial_E15.5_H3K9me3_27_141_0.521_5.690204e-07 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.088771 0.538859 0.197388 0.174982 0.967 0.0 0.033 0.0 0.092837 0.0 0.100251 0.806912 0.008474 0.40867 0.0 0.582856 0.938442 0.008607 0.014076 0.038876 0.024935 0.029506 0.048282 0.897277 0.008618 0.985013 0.00637 0.0 0.934209 0.008628 0.014686 0.042478 0.012403 0.068098 0.0 0.919499 0.016924 0.763356 0.212836 0.006883 MOTIF Forebrain_E12.5_H3K9me3_69_86_0.517_2.75912e-37 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.18384 0.81616 0.0 0.922446 0.058375 0.019178 0.0 0.004757 0.030603 0.006687 0.957953 0.003946 0.0 0.996054 0.0 0.987504 0.0 0.007261 0.005236 0.130289 0.025148 0.041272 0.803291 0.633753 0.002231 0.354478 0.009537 0.74672 0.124015 0.002724 0.126541 0.0 0.015181 0.0 0.984819 MOTIF Hindbrain_E13.5_H3K9me3_35_94_0.528_2.53623e-31 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.893559 0.0 0.106441 0.0 0.003125 0.031111 0.01362 0.952144 0.009692 0.03018 0.960128 0.0 0.995562 0.0 0.00092 0.003518 0.025669 0.017925 0.030293 0.926112 0.589975 0.0 0.410025 0.0 0.717318 0.145587 0.0 0.137096 0.034699 0.029174 0.001469 0.934658 0.186022 0.077719 0.7179 0.018359 MOTIF Limb_E13.5_H3K9me3_63_57_0.524_3.24565e-40 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.991541 0.0 0.008459 0.0 0.201187 0.0 0.03035 0.768464 0.010131 0.413573 0.001244 0.575052 0.925757 0.007004 0.029393 0.037845 0.0 0.005487 0.018618 0.975895 0.005741 0.994259 0.0 0.0 0.91125 0.037193 0.026695 0.024862 0.127199 0.041465 0.02392 0.807417 0.000233 0.954522 0.045245 0.0 0.750167 0.203501 0.046332 0.0 MOTIF Midbrain_E13.5_H3K9me3_16_45_0.533_2.530299e-41 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.918943 0.021064 0.050615 0.009378 0.320377 0.0 0.033212 0.646411 0.021576 0.237573 0.007016 0.733836 0.961571 0.01208 0.018508 0.007841 0.006665 0.0 0.024169 0.969167 0.004674 0.987843 0.004648 0.002835 0.940765 0.035791 0.005774 0.01767 0.074693 0.087057 0.021885 0.816366 0.074658 0.736518 0.180174 0.008649 MOTIF Heart_E12.5_H3K9me3_44_23_0.533_1.354969e-135 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.864857 0.067844 0.0673 0.0 0.001465 0.046711 0.001516 0.950308 0.008813 0.0035 0.979829 0.007857 0.995233 0.00406 0.000707 0.0 0.119606 0.013528 0.028485 0.838381 0.809018 0.042897 0.093968 0.054116 0.67615 0.271124 0.0 0.052725 0.0 0.026079 0.000286 0.973635 0.0 0.02599 0.958376 0.015634 MOTIF Heart_E16.5_H3K9me3_66_119_0.526_1.188055e-45 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.939675 0.046302 0.014023 0.0 0.020721 0.047295 0.01849 0.913494 0.044267 0.008844 0.94471 0.00218 0.984076 0.000291 0.01455 0.001084 0.125884 0.126391 0.276877 0.470848 0.909916 0.01594 0.043103 0.031041 0.788971 0.202747 0.006095 0.002187 0.031347 0.033671 0.001941 0.933041 0.0 0.053415 0.927128 0.019457 MOTIF Liver_E13.5_H3K9me3_13_64_0.526_2.453831e-20 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.988621 0.0 0.011379 0.0 0.021385 0.102733 0.001315 0.874568 0.040212 0.012685 0.943379 0.003724 0.950391 0.0 0.040919 0.00869 0.0 0.16941 0.036909 0.793681 0.87065 0.107967 0.013126 0.008258 0.665626 0.290334 0.003734 0.040306 0.009674 0.236997 0.013802 0.739527 0.0 0.030458 0.96467 0.004872 MOTIF Liver_E15.5_H3K9me3_25_124_0.515_1.9718e-05 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.961394 0.025366 0.01324 0.0 0.023585 0.096601 0.067507 0.812307 0.0 0.104605 0.888593 0.006802 0.933548 0.022642 0.028299 0.015511 0.026999 0.364871 0.029038 0.579093 0.875477 0.059165 0.065358 0.0 0.992321 0.0 0.003245 0.004435 0.025229 0.17704 0.007259 0.790472 0.0 0.0 1.0 0.0 MOTIF Kidney_E16.5_H3K9me3_65_9_0.520_1.445187e-36 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.9955 0.0 0.0045 0.0 0.0 0.000741 0.0 0.999259 0.000785 0.021675 0.0 0.97754 0.83736 0.015666 0.146974 0.0 0.0 0.0 0.0 1.0 0.0 0.994666 0.0 0.005334 0.925755 0.0 0.074245 0.0 0.046598 0.009982 0.003924 0.939496 MOTIF Liver_P0_H3K9me3_40_54_0.524_3.229219e-19 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.984108 0.0 0.013133 0.002759 0.027622 0.00816 0.03224 0.931978 0.009042 0.127874 0.000966 0.862118 0.861753 0.07381 0.058115 0.006322 0.00104 0.009371 0.009539 0.98005 0.013023 0.9739 0.004365 0.008711 0.920325 0.0114 0.0608 0.007474 0.004991 0.026315 0.0 0.968694 0.007229 0.792736 0.198335 0.0017 MOTIF Heart_E13.5_H3K9me3_67_87_0.525_3.65461e-95 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.409722 0.049676 0.335899 0.204703 0.905396 0.045655 0.033363 0.015585 0.055633 0.036982 0.017058 0.890327 0.056673 0.002323 0.931624 0.00938 0.92632 0.0 0.071607 0.002074 0.058432 0.018596 0.300473 0.622499 0.700566 0.0 0.299319 0.000115 0.892105 0.017762 0.03153 0.058603 0.029805 0.023395 0.010286 0.936514 0.114294 0.050814 0.834892 0.0 MOTIF Limb_E13.5_H3K9me3_68_109_0.522_5.760385e-58 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.959905 0.008078 0.032016 0.0 0.006849 0.045109 0.015578 0.932464 0.055784 0.0 0.944216 0.0 0.980818 0.000728 0.018454 0.0 0.019926 0.030171 0.442982 0.506921 0.943584 0.004581 0.04821 0.003626 0.886628 0.002375 0.057783 0.053214 0.066837 0.034719 0.0 0.898444 0.0 0.10173 0.89827 0.0 MOTIF Neural-Tube_E13.5_H3K9me3_37_130_0.530_1.702396e-30 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.915356 0.014344 0.01077 0.05953 0.064326 0.013203 0.039944 0.882527 0.06084 0.028163 0.878254 0.032743 0.890493 0.006231 0.103277 0.0 0.037682 0.000889 0.315368 0.646061 0.984295 0.0 0.009416 0.006288 0.643569 0.001429 0.0037 0.351303 0.054682 0.026988 0.018665 0.899665 0.0 0.064819 0.843046 0.092135 MOTIF Forebrain_P0_H3K9me3_60_148_0.520_4.260959e-06 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.002403 0.105091 0.121154 0.771352 0.009437 0.861931 0.040493 0.088139 0.929564 0.018387 0.012777 0.039272 0.01491 0.007927 0.094434 0.882729 0.023513 0.725809 0.016796 0.233882 0.617845 0.211419 0.02006 0.150676 0.037001 0.043312 0.0 0.919687 0.0 0.949796 0.0 0.050204 0.889122 0.016311 0.00481 0.089757 MOTIF Hindbrain_P0_H3K9me3_11_89_0.532_1.158358e-13 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.47155 0.364509 0.003936 0.160005 0.059672 0.002117 0.105798 0.832414 0.038565 0.700901 0.016183 0.244351 0.934846 0.020974 0.031124 0.013055 0.179131 0.00518 0.008887 0.806801 0.003407 0.926763 0.040309 0.029521 0.726095 0.0 0.067981 0.205924 0.058685 0.034298 0.0 0.907017 0.01434 0.960672 0.0 0.024988 0.965056 0.0 0.008545 0.026399 MOTIF Heart_E12.5_H3K9me3_91_177_0.523_2.200842e-164 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.1 0.1 0.1 0.7 0.1 0.1 0.7 0.1 0.7 0.1 0.1 0.1 0.1 0.1 0.1 0.7 0.1 0.1 0.7 0.1 0.7 0.1 0.1 0.1 0.1 0.1 0.1 0.7 0.7 0.1 0.1 0.1 MOTIF Midbrain_E15.5_H3K9me3_79_120_0.517_1.872454e-25 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.899214 0.016544 0.040932 0.04331 0.005018 0.098503 0.401285 0.495194 0.096521 0.02232 0.867839 0.01332 0.858168 0.040776 0.094423 0.006633 0.177103 0.068178 0.0 0.754719 0.023991 0.005281 0.95264 0.018088 0.956957 0.014087 0.0 0.028956 0.019164 0.053089 0.002401 0.925345 0.833546 0.001346 0.165108 0.0 MOTIF Liver_E12.5_H3K9me3_35_109_0.519_3.736438e-26 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.162367 0.02129 0.003028 0.813315 0.0 0.0 1.0 0.0 0.968521 0.018254 0.013225 0.0 0.063745 0.069968 0.0 0.866287 0.075186 0.0 0.924814 0.0 0.965941 0.034059 0.0 0.0 0.018857 0.009026 0.005223 0.966894 0.662157 0.0 0.337843 0.0 0.598734 0.079753 0.305424 0.016089 MOTIF Heart_E12.5_H3K9me3_88_3_0.524_4.360204e-197 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 1.0 0.0 0.0 0.0 0.0 0.0 0.054202 0.945798 0.017622 0.24754 0.000594 0.734244 0.885913 0.001271 0.0609 0.051916 0.000938 0.150044 0.039745 0.809273 0.003743 0.986084 0.0 0.010174 0.946077 0.017435 0.024545 0.011942 0.0 0.235531 0.002498 0.761971 0.0 0.919682 0.072615 0.007703 0.988062 0.001624 0.010315 0.0 0.178995 0.577964 0.0 0.243041 MOTIF Intestine_P0_H3K9me3_41_62_0.527_2.91855e-14 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.009596 0.0 0.990404 0.044451 0.032506 0.923043 0.0 0.977722 0.019897 0.0 0.002381 0.027351 0.049711 0.293917 0.629022 0.069821 0.007327 0.917426 0.005426 0.921884 0.057951 0.005251 0.014914 0.057887 0.006122 0.031323 0.904668 0.924545 0.0 0.057175 0.01828 0.87331 0.118537 0.005777 0.002377 0.0 0.039976 0.073334 0.886691 MOTIF Forebrain_E11.5_H3K9me3_67_142_0.513_2.025282e-06 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.18218 0.039358 0.778462 0.025299 0.002515 0.936298 0.035888 0.632734 0.042318 0.317768 0.007179 0.0 0.013671 0.062118 0.924212 0.018402 0.018735 0.962863 0.0 0.855723 0.064556 0.046502 0.033219 0.019945 0.02752 0.053513 0.899022 0.873931 0.001089 0.117752 0.007228 0.81081 0.0 0.0 0.18919 MOTIF Heart_E11.5_H3K9me3_26_135_0.531_3.634753e-16 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.03194 0.0 0.96806 0.031951 0.019294 0.948756 0.0 0.827944 0.006903 0.165152 0.0 0.005803 0.008185 0.0 0.986013 0.001467 0.052283 0.942709 0.00354 0.7623 0.208174 0.029526 0.0 0.05963 0.033081 0.012773 0.894515 0.965454 0.0 0.034546 0.0 0.730412 0.10001 0.063564 0.106015 MOTIF Heart_P0_H3K9me3_10_119_0.537_7.089146e-26 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.048868 0.002943 0.948189 0.003149 0.091896 0.889064 0.015891 0.905437 0.067729 0.017446 0.009388 0.03863 0.019098 0.024894 0.917378 0.003387 0.006174 0.99044 0.0 0.932586 0.032854 0.03456 0.0 0.025112 0.030945 0.026012 0.91793 0.709159 0.0 0.289875 0.000966 0.646111 0.015662 0.001749 0.336478 0.239022 0.276956 0.012891 0.471131 MOTIF Hindbrain_E12.5_H3K9me3_75_136_0.518_1.23765e-35 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.004557 0.020977 0.0 0.974466 0.014752 0.070969 0.91428 0.0 0.9058 0.0 0.059323 0.034877 0.364301 0.010417 0.030271 0.595011 0.02128 0.0 0.97872 0.0 0.932321 0.020253 0.0 0.047426 0.02024 0.020442 0.030674 0.928645 0.619931 0.0 0.380069 0.0 0.848469 0.135189 0.0 0.016342 MOTIF Heart_E14.5_H3K9me3_70_106_0.520_7.96687e-25 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.003973 0.027561 0.017976 0.95049 0.007683 0.005101 0.987216 0.0 0.956302 0.0 0.014535 0.029163 0.178377 0.076806 0.011613 0.733204 0.040768 0.0 0.959232 0.0 0.950014 0.04481 0.001398 0.003778 0.018345 0.099799 0.0 0.881856 0.774798 0.001697 0.222907 0.000597 0.96462 0.0 0.0 0.03538 MOTIF Hindbrain_E16.5_H3K9me3_32_104_0.528_7.212019e-17 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.022778 0.088839 0.888383 0.0 0.042511 0.957489 0.0 0.787553 0.0 0.191433 0.021014 0.196357 0.026555 0.0 0.777088 0.003914 0.0 0.996086 0.0 0.957822 0.010664 0.006981 0.024533 0.020872 0.146247 0.032609 0.800272 0.747264 0.021157 0.227716 0.003863 0.857945 0.030409 0.0 0.111646 MOTIF Liver_E13.5_H3K9me3_16_39_0.524_7.394742e-20 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.879832 0.008388 0.023155 0.088625 0.009509 0.086358 0.033722 0.870411 0.0005 0.432738 0.0 0.566763 0.909207 0.005209 0.039307 0.046277 0.00138 0.033348 0.038672 0.9266 0.005065 0.994935 0.0 0.0 0.916747 0.002936 0.080316 0.0 0.035114 0.093231 0.005729 0.865925 0.0 0.926355 0.064601 0.009044 0.778633 0.156615 0.064045 0.000707 MOTIF Hindbrain_E13.5_H3K9me3_29_37_0.530_1.189561e-47 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.003243 0.007314 0.138913 0.85053 0.029201 0.026356 0.944444 0.0 0.861374 0.0 0.138626 0.0 0.048211 0.006208 0.0 0.945581 0.004194 0.021932 0.973874 0.0 0.828895 0.055734 0.020041 0.09533 0.017736 0.021352 0.0 0.960912 0.699359 0.030992 0.26063 0.009018 0.712193 0.088018 0.005675 0.194114 0.109957 0.0 0.116439 0.773604 MOTIF Limb_E12.5_H3K9me3_121_54_0.508_3.441477e-40 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.043595 0.075265 0.88114 0.0 0.030991 0.969009 0.0 0.964414 0.002301 0.033285 0.0 0.03935 0.014063 0.020338 0.926249 0.0 0.000543 0.999457 0.0 0.986284 0.013716 0.0 0.0 0.00357 0.026641 0.007081 0.962707 0.696518 0.0 0.303482 0.0 0.795142 0.127641 0.0 0.077217 MOTIF Neural-Tube_E12.5_H3K9me3_73_26_0.517_1.328209e-44 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0006 0.033175 0.049733 0.916492 0.0 0.016607 0.983393 0.0 0.9095 0.008199 0.082301 0.0 0.031527 0.025011 0.068484 0.874979 0.01049 0.0 0.979546 0.009964 0.939221 0.038348 0.0 0.022431 0.006051 0.015767 0.006303 0.971879 0.658877 0.0 0.341123 0.0 0.849708 0.064777 0.0 0.085516 MOTIF Heart_E13.5_H3K9me3_66_86_0.525_1.219181e-72 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.012318 0.076786 0.910896 0.001878 0.0 0.998122 0.0 0.873247 0.044496 0.080874 0.001383 0.031551 0.016531 0.017535 0.934383 0.006137 0.0 0.993863 0.0 0.697648 0.04971 0.016497 0.236145 0.000669 0.003452 0.0 0.995879 0.695598 0.069231 0.182671 0.052501 0.891073 0.089476 0.0 0.019451 MOTIF Neural-Tube_E13.5_H3K9me3_58_69_0.524_1.060426e-37 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.018988 0.032193 0.131757 0.817061 0.006308 0.015675 0.978017 0.0 0.897896 0.055226 0.020167 0.026711 0.119148 0.006237 0.063953 0.810663 0.0 0.000763 0.999237 0.0 0.727907 0.107768 0.003942 0.160384 0.013483 0.042312 0.012409 0.931796 0.720075 0.050399 0.221677 0.007849 0.679591 0.056473 0.00499 0.258946 0.13068 0.06003 0.298241 0.511049