MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Limb_E11.5_H3K4me3_37_69_0.681_4.725228e-317 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.023358 0.923594 0.049009 0.004039 0.089645 0.003563 0.89518 0.011613 0.0 0.928649 0.060405 0.010946 0.0 0.04857 0.849024 0.102406 0.697554 0.046212 0.0302 0.226034 0.018452 0.038842 0.807874 0.134833 0.352462 0.0 0.628823 0.018716 0.853641 0.040653 0.0 0.105707 0.011247 0.901516 0.087237 0.0 MOTIF Cranio-Facial_E14.5_H3K4me3_38_158_0.653_0 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.028 0.882 0.055 0.035 0.001 0.131 0.804 0.064 0.036 0.821 0.111 0.032 0.043 0.081 0.875 0.001 0.838 0.001 0.134 0.027 0.001 0.001 0.988 0.01 0.988 0.001 0.001 0.01 0.857 0.069 0.053 0.021 MOTIF Lung_P0_H3K4me3_15_162_0.707_0 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.039 0.873 0.001 0.087 0.022 0.035 0.878 0.065 0.158 0.651 0.055 0.136 0.111 0.18 0.708 0.001 0.675 0.011 0.228 0.086 0.001 0.173 0.652 0.174 0.812 0.001 0.107 0.08 0.75 0.153 0.046 0.051 MOTIF Stomach_E16.5_H3K4me3_26_164_0.670_0 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.099 0.772 0.06 0.069 0.039 0.107 0.801 0.053 0.098 0.704 0.132 0.066 0.05 0.163 0.736 0.051 0.707 0.075 0.12 0.098 0.052 0.112 0.738 0.098 0.735 0.056 0.119 0.09 0.807 0.057 0.064 0.072 MOTIF Intestine_P0_H3K4me3_70_58_0.576_5.950223e-144 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.151096 0.848904 0.0 0.0 0.051071 0.02498 0.159431 0.764518 0.040989 0.945431 0.0 0.01358 0.0 0.015493 0.86371 0.120797 0.0 0.537763 0.462237 0.0 0.0 0.0 1.0 0.0 0.878367 0.0 0.121633 0.0 0.0 0.0 0.95089 0.04911 0.976254 0.023746 0.0 0.0 MOTIF Kidney_E16.5_H3K4me3_21_31_0.668_3.012057e-311 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.165079 0.778307 0.0 0.056615 0.0 0.0 0.489568 0.510432 0.045757 0.921934 0.032309 0.0 0.0 0.054152 0.945848 0.0 0.070123 0.896789 0.022384 0.010704 0.0 0.036093 0.963907 0.0 0.90197 0.018848 0.034812 0.04437 0.0 0.0 0.977271 0.022729 0.878243 0.053686 0.068072 0.0 MOTIF Kidney_E15.5_H3K4me3_35_31_0.654_2.712717e-318 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.107709 0.858633 0.033658 0.0 0.089569 0.0 0.018504 0.891926 0.0 0.91999 0.056118 0.023892 0.004021 0.063993 0.882087 0.049899 0.017659 0.963433 0.007636 0.011272 0.018971 0.0 0.981029 0.0 0.416596 0.0 0.544117 0.039287 0.0 0.020638 0.953155 0.026207 0.69495 0.045486 0.0 0.259564 0.03006 0.49939 0.390975 0.079574 MOTIF Liver_E14.5_H3K4me3_22_17_0.661_1.091531e-309 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.023248 0.862644 0.093899 0.020209 0.071854 0.022145 0.176423 0.729579 0.0 0.955665 0.031807 0.012528 0.011221 0.087937 0.900843 0.0 0.018777 0.887818 0.085739 0.007666 0.0 0.0 1.0 0.0 0.761325 0.071104 0.04419 0.12338 0.0 0.208619 0.768051 0.02333 0.676985 0.068638 0.084344 0.170034 0.152366 0.445598 0.333288 0.068748 0.023784 0.640613 0.0 0.335603 MOTIF Hindbrain_E11.5_H3K4me3_40_34_0.662_2.234012e-318 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.0 0.971633 0.0 0.028367 0.027592 0.037639 0.067762 0.867006 0.0 0.970697 0.029303 0.0 0.0 0.225746 0.774254 0.0 0.0 0.91026 0.08974 0.0 0.0 0.032572 0.967428 0.0 0.833012 0.055319 0.060237 0.051432 0.0 0.0 0.944195 0.055805 0.453566 0.128002 0.074033 0.344398 MOTIF Lung_P0_H3K4me3_24_31_0.688_3.037614e-319 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.024272 0.844121 0.099749 0.031858 0.083103 0.0 0.086585 0.830312 0.0 1.0 0.0 0.0 0.007574 0.10568 0.886745 0.0 0.0 0.990334 0.009666 0.0 0.0 0.0 1.0 0.0 0.772757 0.0 0.150043 0.0772 0.0 0.018066 0.934644 0.04729 0.578494 0.0 0.127056 0.29445 MOTIF Midbrain_E14.5_H3K4me3_62_44_0.608_1.576193e-245 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.080777 0.919223 0.0 0.0 0.098804 0.0 0.023424 0.877773 0.011886 0.909086 0.057828 0.0212 0.002752 0.068474 0.928774 0.0 0.0 0.826989 0.157119 0.015892 0.0 0.022706 0.977294 0.0 0.821563 0.064607 0.037528 0.076302 0.021328 0.035848 0.916202 0.026621 0.39403 0.0 0.123947 0.482023 0.031348 0.067818 0.809112 0.091722 MOTIF Kidney_P0_H3K4me3_51_35_0.624_8.98205e-244 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.023607 0.940135 0.036258 0.0 0.014896 0.113515 0.063333 0.808257 0.00574 0.941134 0.048765 0.00436 0.0 0.076308 0.904044 0.019648 0.038056 0.696387 0.236059 0.029498 0.0 0.011279 0.987164 0.001557 0.902491 0.045423 0.02391 0.028176 0.0 0.373033 0.579588 0.047378 0.728437 0.088104 0.113009 0.07045 0.040121 0.389054 0.527675 0.04315 0.02004 0.0 0.126287 0.853673 MOTIF Neural-Tube_E11.5_H3K4me3_29_39_0.675_8.882214e-315 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.102656 0.897344 0.0 0.0 0.149881 0.139973 0.053006 0.657141 0.009278 0.956588 0.026465 0.007668 0.0 0.037941 0.934559 0.0275 0.042485 0.804194 0.153321 0.0 0.0 0.0 1.0 0.0 0.851044 0.059805 0.0 0.089151 0.0 0.21962 0.74196 0.03842 0.726465 0.0 0.119234 0.154301 MOTIF Neural-Tube_E14.5_H3K4me3_49_50_0.628_1.741681e-317 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.029341 0.945701 0.024959 0.0 0.153571 0.032901 0.069438 0.744091 0.013225 0.92358 0.03807 0.025125 0.0 0.316677 0.660442 0.02288 0.0 0.756742 0.235387 0.007872 0.005575 0.018942 0.975483 0.0 0.817645 0.130485 0.006856 0.045014 0.0 0.167623 0.79512 0.037257 0.944663 0.010153 0.033679 0.011505 MOTIF Midbrain_E12.5_H3K4me3_18_38_0.699_0 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.073869 0.926131 0.0 0.0 0.035077 0.0 0.06074 0.904183 0.0 0.990145 0.009855 0.0 0.0 0.017283 0.982717 0.0 0.0 0.917516 0.082484 0.0 0.0 0.129032 0.864237 0.006732 0.803127 0.0 0.196873 0.0 0.0 0.518674 0.412733 0.068593 MOTIF Stomach_P0_H3K4me3_9_41_0.711_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.073217 0.926783 0.0 0.0 0.050924 0.074694 0.067956 0.806426 0.0 0.923894 0.076106 0.0 0.0 0.0 0.973788 0.026212 0.0 0.983838 0.016162 0.0 0.0 0.014683 0.9682 0.017117 0.550489 0.039056 0.39484 0.015615 0.0 0.287946 0.687375 0.024679 0.757105 0.045456 0.145 0.052439 MOTIF Cranio-Facial_E11.5_H3K4me2_15_24_0.674_3.624825e-309 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.2104 0.757307 0.032293 0.0 0.112803 0.021709 0.095448 0.77004 0.013126 0.90933 0.068367 0.009177 0.005874 0.030873 0.943507 0.019746 0.0 0.987429 0.012571 0.0 0.0 0.0 1.0 0.0 0.592765 0.063505 0.330725 0.013004 0.0 0.015619 0.940726 0.043655 0.659804 0.032192 0.0 0.308004 MOTIF Hindbrain_E11.5_H3K4me2_17_30_0.672_9.372143e-314 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.079057 0.920943 0.0 0.0 0.129356 0.026684 0.281726 0.562234 0.044059 0.955941 0.0 0.0 0.0 0.089122 0.845994 0.064884 0.036827 0.925495 0.032598 0.005079 0.0 0.033493 0.966507 0.0 0.624164 0.08512 0.167321 0.123396 0.0 0.0 0.976745 0.023255 0.83082 0.042537 0.036619 0.090025 MOTIF Cranio-Facial_E15.5_H3K9ac_51_169_0.576_2.899385e-77 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.749 0.097 0.094 0.06 0.722 0.1 0.101 0.077 0.06 0.101 0.102 0.737 0.058 0.088 0.096 0.758 0.061 0.819 0.059 0.061 0.076 0.112 0.056 0.756 0.098 0.683 0.117 0.102 0.083 0.105 0.719 0.093 0.107 0.708 0.107 0.078 0.085 0.095 0.741 0.079 0.772 0.077 0.081 0.07 0.059 0.053 0.838 0.05 MOTIF Neural-Tube_E15.5_H3K9ac_20_21_0.657_0 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.03426 0.898601 0.0 0.067139 0.022179 0.31569 0.247477 0.414654 0.0 0.926171 0.073829 0.0 0.0 0.04583 0.95417 0.0 0.039424 0.94831 0.004721 0.007545 0.0 0.022469 0.977531 0.0 0.873493 0.077794 0.016373 0.03234 0.0 0.040498 0.930957 0.028544 0.742865 0.202558 0.0 0.054577 0.507519 0.071836 0.228043 0.192603 MOTIF Forebrain_E16.5_H3K9ac_53_50_0.561_3.790423e-120 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.113046 0.807592 0.060983 0.018379 0.029237 0.199284 0.019872 0.751608 0.039779 0.881531 0.07869 0.0 0.0 0.231717 0.742067 0.026216 0.0 0.608765 0.391235 0.0 0.0 0.0428 0.9572 0.0 0.961654 0.038346 0.0 0.0 0.019139 0.060353 0.882282 0.038226 0.890233 0.065325 0.0 0.044442 0.046996 0.388806 0.436069 0.128129 MOTIF Cranio-Facial_E11.5_H3K9ac_45_35_0.574_2.163977e-132 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.097245 0.856362 0.046393 0.0 0.065722 0.02014 0.108156 0.805982 0.009797 0.968559 0.021643 0.0 0.0 0.071316 0.869589 0.059095 0.0 0.648159 0.347669 0.004172 0.0 0.0 1.0 0.0 0.894535 0.0 0.026176 0.079288 0.0 0.023012 0.91478 0.062208 0.68975 0.058191 0.141018 0.11104 0.10818 0.614905 0.123701 0.153214 MOTIF Lung_P0_H3K9ac_62_64_0.546_6.17657e-50 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.105899 0.856285 0.037816 0.0 0.016924 0.0 0.032025 0.951051 0.016091 0.88714 0.096769 0.0 0.010927 0.116218 0.782465 0.09039 0.0 0.481522 0.518478 0.0 0.0 0.0 1.0 0.0 0.865439 0.100826 0.008167 0.025568 0.0 0.051718 0.883752 0.06453 0.850887 0.111335 0.037779 0.0 MOTIF Liver_E15.5_H3K9ac_24_28_0.613_3.991769e-318 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.079427 0.893826 0.026747 0.0 0.321922 0.0 0.021671 0.656407 0.0 0.990985 0.009015 0.0 0.0 0.12582 0.87418 0.0 0.0 0.964123 0.0 0.035877 0.0 0.0 1.0 0.0 0.801534 0.122274 0.009317 0.066875 0.0 0.194737 0.722346 0.082917 MOTIF Cranio-Facial_E12.5_H3K9ac_36_53_0.579_2.863286e-316 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.262823 0.65656 0.080617 0.0 0.034815 0.0 0.090847 0.874338 0.0 0.970995 0.0 0.029005 0.0 0.023311 0.908881 0.067808 0.0 0.754473 0.245527 0.0 0.0 0.0 1.0 0.0 0.958108 0.0 0.041892 0.0 0.0 0.049009 0.874958 0.076033 MOTIF Midbrain_E11.5_H3K9ac_56_51_0.565_3.428458e-150 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.161532 0.838468 0.0 0.0 0.109401 0.0 0.0701 0.820499 0.0 0.980996 0.0 0.019004 0.0 0.0 0.904299 0.095701 0.0 0.753796 0.246204 0.0 0.0 0.0 1.0 0.0 0.723719 0.0 0.276281 0.0 0.0 0.029245 0.877972 0.092783 0.896083 0.021455 0.024104 0.058358 MOTIF Heart_P0_H3K9ac_25_27_0.602_3.77042e-309 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.122679 0.877321 0.0 0.0 0.074492 0.009549 0.085894 0.830065 0.0 1.0 0.0 0.0 0.001699 0.018242 0.98006 0.0 0.0 0.908814 0.091186 0.0 0.0 0.0 1.0 0.0 0.865031 0.02392 0.053174 0.057875 0.0 0.058946 0.782383 0.158671 0.654747 0.026539 0.202306 0.116408 MOTIF Limb_E14.5_H3K9ac_19_30_0.619_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.122694 0.840733 0.036573 0.0 0.077206 0.034636 0.077102 0.811056 0.0 0.987609 0.0 0.012391 0.004659 0.030689 0.964652 0.0 0.0 0.986982 0.0 0.013018 0.0 0.010725 0.989275 0.0 0.904856 0.019213 0.019913 0.056017 0.0 0.054937 0.807297 0.137766 0.55503 0.093821 0.155405 0.195744 MOTIF Neural-Tube_E11.5_H3K9ac_31_30_0.609_0 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.305879 0.694121 0.0 0.0 0.0 0.0 0.111695 0.888305 0.0 1.0 0.0 0.0 0.0 0.1598 0.8402 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.921465 0.0 0.078535 0.0 0.0 0.021415 0.827037 0.151548 MOTIF Hindbrain_P0_H3K9ac_37_38_0.603_6.598648e-303 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.004706 0.932799 0.039813 0.022681 0.036274 0.161343 0.074468 0.727915 0.037075 0.962925 0.0 0.0 0.0 0.374938 0.625062 0.0 0.0 0.969196 0.010998 0.019806 0.0 0.03621 0.96379 0.0 0.790127 0.043171 0.106257 0.060444 0.0 0.142419 0.797608 0.059973 0.844528 0.147354 0.0 0.008118 MOTIF Limb_E11.5_H3K9ac_36_24_0.576_4.401443e-145 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.06838 0.873372 0.058248 0.0 0.060961 0.186553 0.045203 0.707283 0.008912 0.991088 0.0 0.0 0.0 0.218915 0.74727 0.033815 0.062873 0.908193 0.027477 0.001458 0.0 0.09109 0.902532 0.006378 0.799265 0.121458 0.050384 0.028894 0.0 0.127512 0.793407 0.079081 0.77239 0.043559 0.160856 0.023195 MOTIF Neural-Tube_E12.5_H3K9ac_31_23_0.610_2.054228e-310 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.047536 0.88473 0.067734 0.0 0.0 0.31709 0.0 0.68291 0.0 0.98126 0.0 0.01874 0.000989 0.0 0.999011 0.0 0.0 0.863479 0.136521 0.0 0.0 0.0 1.0 0.0 0.89302 0.069899 0.03377 0.003311 0.0 0.077536 0.787643 0.13482 0.845913 0.030331 0.123756 0.0 MOTIF Intestine_E14.5_H3K9ac_27_35_0.637_1.423187e-310 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.08689 0.784229 0.072995 0.055886 0.108814 0.043846 0.039766 0.807574 0.0 1.0 0.0 0.0 0.017934 0.268481 0.682518 0.031067 0.0 0.985509 0.0 0.014491 0.0 0.0 1.0 0.0 0.574865 0.0 0.240019 0.185116 0.0 0.011615 0.961862 0.026523 0.828744 0.066296 0.044016 0.060943 MOTIF Intestine_P0_H3K9ac_8_39_0.650_0 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.167357 0.75707 0.075573 0.0 0.1217 0.03003 0.073399 0.774871 0.0 1.0 0.0 0.0 0.0 0.010635 0.946013 0.043352 0.0 0.989118 0.007198 0.003685 0.0 0.0 1.0 0.0 0.481622 0.0 0.40592 0.112458 0.0 0.013829 0.902261 0.08391 0.721834 0.041785 0.141528 0.094853 MOTIF Stomach_P0_H3K9ac_20_24_0.607_1.028019e-275 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.207851 0.746494 0.045656 0.0 0.230114 0.128576 0.08393 0.55738 0.0 1.0 0.0 0.0 0.022932 0.034327 0.942742 0.0 0.0 0.967596 0.013465 0.018939 0.0 0.0 1.0 0.0 0.776146 0.0 0.109929 0.113925 0.0 0.033482 0.885905 0.080613 0.942917 0.015565 0.0 0.041517 0.430716 0.292209 0.126641 0.150433