MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF Hindbrain_E14.5_H3K27me3_47_124_0.511_4.211698e-05 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.772784 0.090872 0.086223 0.050121 0.009699 0.0 0.988383 0.001918 0.038315 0.002027 0.959658 0.0 0.819873 0.004809 0.154829 0.020488 0.749481 0.099054 0.146708 0.004757 0.696018 0.167717 0.021098 0.115167 0.038878 0.903833 0.024464 0.032825 0.00573 0.227903 0.140688 0.625679 0.016994 0.046747 0.897034 0.039225 0.316859 0.108543 0.139434 0.435164 MOTIF Neural-Tube_E11.5_H3K27me3_47_138_0.502_1.085394e-06 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.226996 0.54083 0.18596 0.046214 0.849967 0.058903 0.04777 0.04336 0.027358 0.0 0.965424 0.007219 0.0 0.0 0.996907 0.003093 0.888751 0.021661 0.049625 0.039963 0.415087 0.363173 0.200887 0.020853 0.790918 0.15588 0.0 0.053203 0.0 0.868206 0.126522 0.005273 0.032996 0.223997 0.028373 0.714634 0.033365 0.09028 0.869645 0.00671 MOTIF Cranio-Facial_E13.5_H3K4me1_63_115_0.513_1.236801e-28 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.273337 0.013284 0.452133 0.261246 0.704669 0.010704 0.261768 0.022859 0.002763 0.003176 0.994061 0.0 0.022837 0.02868 0.938811 0.009672 0.836055 0.045616 0.09718 0.021149 0.641994 0.283772 0.064296 0.009937 0.758499 0.074448 0.038798 0.128256 0.013011 0.80542 0.17674 0.004829 0.082838 0.064431 0.065356 0.787375 0.0 0.005797 0.958892 0.035311 0.176234 0.466212 0.2003 0.157254 MOTIF Hindbrain_E16.5_H3K4me1_67_115_0.515_1.202593e-19 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.849547 0.094253 0.056199 0.0 0.047393 0.0 0.944547 0.008061 0.030902 0.003298 0.955385 0.010414 0.737341 0.0 0.252904 0.009755 0.911678 0.045614 0.037184 0.005524 0.974934 0.022 0.0 0.003066 0.089614 0.761837 0.062936 0.085613 0.034516 0.042081 0.487645 0.435757 0.018943 0.031775 0.938908 0.010373 MOTIF Neural-Tube_E14.5_H3K4me1_78_144_0.507_1.136591e-18 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.029438 0.0 0.970562 0.0 0.044674 0.0 0.87073 0.084595 0.584833 0.0 0.415167 0.0 0.79664 0.090782 0.112577 0.0 0.953719 0.046281 0.0 0.0 0.0 0.962448 0.037552 0.0 0.0 0.050388 0.013512 0.9361 0.0 0.011176 0.988824 0.0 MOTIF Liver_E11.5_H3K27me3_48_109_0.511_7.42232e-06 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.03716 0.0 0.93541 0.02743 0.025441 0.0 0.959056 0.015503 0.656865 0.007542 0.321806 0.013788 0.852519 0.076482 0.069874 0.001125 0.758992 0.084398 0.080936 0.075674 0.024992 0.908617 0.066392 0.0 0.079975 0.200427 0.178285 0.541313 0.013676 0.014897 0.956141 0.015286 0.746273 0.162381 0.085453 0.005893 MOTIF Heart_E11.5_H3K27ac_67_143_0.516_2.123452e-28 letter-probability matrix: alength= 4 w= 9 nsites= 100 E= 1.0e-1 0.14229 0.01488 0.84283 0.0 0.031046 0.0 0.95472 0.014234 0.823218 0.06151 0.045914 0.069357 0.739512 0.24141 0.0 0.019078 0.734267 0.0 0.168035 0.097698 0.005022 0.947274 0.047704 0.0 0.005292 0.052623 0.052632 0.889454 0.019204 0.038816 0.933548 0.008431 0.579648 0.33695 0.028057 0.055345 MOTIF Liver_E11.5_H3K27ac_79_112_0.506_1.450531e-09 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.055552 0.000858 0.940234 0.003356 0.033072 0.016502 0.919191 0.031236 0.843624 0.021902 0.062596 0.071878 0.58442 0.353716 0.061 0.000864 0.868518 0.008911 0.058857 0.063715 0.014051 0.952013 0.032503 0.001433 0.06341 0.16764 0.063375 0.705575 0.005517 0.032993 0.959896 0.001594 0.599407 0.239872 0.108647 0.052074 0.331793 0.073568 0.573296 0.021343 0.014756 0.020501 0.91739 0.047353 MOTIF Heart_E14.5_H3K27ac_95_103_0.503_2.010103e-11 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.004515 0.95336 0.033463 0.008662 0.180712 0.008174 0.02811 0.783005 0.003245 0.952641 0.03456 0.009553 0.627565 0.066061 0.290763 0.015611 0.0 0.076131 0.912787 0.011082 0.183891 0.028325 0.040218 0.747565 0.026367 0.059608 0.267834 0.646191 0.049242 0.046943 0.031662 0.872152 0.028534 0.904032 0.004629 0.062805 0.035222 0.611428 0.017854 0.335496 0.347519 0.042271 0.61021 0.0 MOTIF Heart_E13.5_H3K27ac_83_107_0.504_4.309932e-09 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.006526 0.938066 0.017401 0.038006 0.155418 0.051169 0.037148 0.756266 0.017455 0.939362 0.030969 0.012214 0.40047 0.374434 0.160994 0.064101 0.002989 0.050716 0.885989 0.060306 0.016047 0.065913 0.018841 0.899198 0.032852 0.030336 0.064287 0.872525 0.033501 0.051703 0.008917 0.905879 0.019075 0.906265 0.01195 0.06271 0.012165 0.389421 0.0 0.598414 MOTIF Limb_E11.5_H3K27ac_74_132_0.511_1.917779e-06 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.941035 0.029284 0.029681 0.043521 0.049246 0.103798 0.803435 0.021443 0.923603 0.018133 0.036821 0.541869 0.266239 0.074491 0.117401 0.021251 0.074339 0.903844 0.000566 0.061328 0.014113 0.058431 0.866127 0.020477 0.017261 0.084006 0.878255 0.08338 0.073434 0.010515 0.832671 0.022313 0.932987 0.003721 0.040979 0.018725 0.552844 0.16949 0.258941 MOTIF Stomach_P0_H3K27ac_90_100_0.503_1.543729e-09 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.00253 0.875755 0.090469 0.031246 0.049449 0.050198 0.04102 0.859334 0.0 0.947271 0.046652 0.006076 0.702513 0.058219 0.203875 0.035393 0.001801 0.090624 0.880191 0.027385 0.033226 0.062809 0.040747 0.863219 0.010854 0.034818 0.16656 0.787768 0.020949 0.35786 0.010532 0.610659 0.011808 0.971588 0.002221 0.014383 0.003553 0.366522 0.0 0.629925 0.601256 0.114814 0.210052 0.073878 0.452916 0.447528 0.099556 0.0 MOTIF Midbrain_E15.5_H3K27me3_46_89_0.509_0.006406358 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.760571 0.02455 0.198108 0.016771 0.043885 0.0 0.951077 0.005038 0.028232 0.008312 0.947825 0.015631 0.916905 0.046272 0.030644 0.006179 0.742096 0.147278 0.091201 0.019425 0.535439 0.019899 0.36896 0.075703 0.01711 0.901093 0.067927 0.013869 0.134889 0.171342 0.040501 0.653269 0.014203 0.002028 0.979209 0.00456 0.779758 0.152943 0.01961 0.047689 MOTIF Forebrain_E12.5_H3K27me3_44_115_0.507_4.271646e-06 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.0e-1 0.0 1.0 0.0 0.0 0.721018 0.07882 0.083806 0.116357 0.0 0.047243 0.952757 0.0 0.031693 0.093809 0.042128 0.83237 0.0 0.020868 0.066954 0.912179 0.0 0.026199 0.0 0.973801 0.013128 0.761509 0.0 0.225363 0.0 1.0 0.0 0.0 MOTIF Forebrain_E13.5_H3K27me3_39_127_0.510_6.343117e-11 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.018792 0.0 0.981208 0.0 0.016769 0.0 0.954461 0.02877 0.944656 0.011364 0.028514 0.015466 0.677804 0.237919 0.05895 0.025326 0.68705 0.043873 0.126302 0.142775 0.003321 0.911576 0.081741 0.003362 0.056213 0.115954 0.079127 0.748706 0.003824 0.006458 0.985405 0.004313 0.370972 0.166055 0.295592 0.16738 0.219621 0.285827 0.322746 0.171805 MOTIF Limb_E15.5_H3K4me1_42_116_0.524_2.244591e-58 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.052667 0.0 0.947333 0.0 0.044139 0.0 0.883822 0.072039 0.94864 0.0 0.046078 0.005282 0.850381 0.068043 0.081575 0.0 0.869942 0.0 0.092632 0.037426 0.0 0.94794 0.05206 0.0 0.0 0.089337 0.075923 0.83474 0.0 0.009404 0.981746 0.00885 0.176312 0.37283 0.257585 0.193273 0.279582 0.47965 0.240768 0.0 MOTIF Kidney_E14.5_H3K4me1_67_140_0.513_1.205075e-14 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.028205 0.007182 0.954507 0.010106 0.072937 0.0 0.836297 0.090766 0.847872 0.0 0.043829 0.108299 0.783482 0.188503 0.011745 0.01627 0.78327 0.078787 0.0 0.137943 0.0 0.928376 0.071624 0.0 0.066706 0.068805 0.066358 0.798132 0.0 0.008783 0.983951 0.007266 0.487071 0.210091 0.254645 0.048193 0.183117 0.256925 0.51834 0.041618 MOTIF Midbrain_E11.5_H3K4me1_78_140_0.512_7.640528e-18 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.028523 0.009177 0.9225 0.0398 0.071052 0.0 0.844985 0.083962 0.963831 0.0 0.0 0.036169 0.699804 0.263732 0.0 0.036464 0.834067 0.05447 0.0 0.111463 0.011955 0.859067 0.128979 0.0 0.058558 0.082737 0.038206 0.820499 0.0 0.007547 0.989823 0.00263 0.455395 0.277125 0.200249 0.067231 0.068458 0.501145 0.343599 0.086798 MOTIF Neural-Tube_E11.5_H3K4me1_46_67_0.521_3.315334e-25 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.219547 0.386825 0.323577 0.070051 0.219928 0.054639 0.442785 0.282648 0.00639 0.959644 0.031135 0.002831 0.584478 0.051048 0.141171 0.223303 0.008826 0.229709 0.732586 0.028879 0.092658 0.044486 0.058278 0.804578 0.020136 0.051763 0.219994 0.708107 0.021807 0.042586 0.021196 0.914411 0.029226 0.857362 0.011943 0.10147 0.018412 0.960448 0.000653 0.020487 0.029949 0.841667 0.077556 0.050828 0.21754 0.052834 0.658191 0.071435 MOTIF Cranio-Facial_E15.5_H3K4me1_47_78_0.519_5.97168e-34 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.40018 0.043842 0.340551 0.215427 0.020932 0.928725 0.041061 0.009281 0.486532 0.080622 0.335733 0.097113 0.02259 0.025965 0.940839 0.010605 0.06195 0.117965 0.106836 0.713249 0.092744 0.010352 0.046373 0.850531 0.015256 0.033004 0.0 0.95174 0.030776 0.845218 0.0 0.124006 0.001348 0.804034 0.0 0.194617 0.021234 0.951828 0.0 0.026938 0.141234 0.610373 0.199921 0.048472 MOTIF Forebrain_E16.5_H3K4me1_52_88_0.520_4.894017e-32 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.195788 0.176581 0.400125 0.227506 0.003014 0.967063 0.026338 0.003585 0.545615 0.072753 0.162857 0.218775 0.012867 0.059284 0.76613 0.16172 0.091831 0.07495 0.038593 0.794626 0.052173 0.033473 0.053618 0.860736 0.008466 0.065107 0.013001 0.913427 0.034944 0.838618 0.001156 0.125282 0.007678 0.840481 0.0 0.151842 0.032656 0.931356 0.022069 0.013918 0.14837 0.277969 0.272551 0.301109 MOTIF Lung_P0_H3K4me1_49_85_0.518_1.085714e-16 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.961149 0.038851 0.0 0.680479 0.056289 0.183141 0.080091 0.01672 0.040737 0.907693 0.03485 0.066428 0.074829 0.0 0.858743 0.082406 0.207934 0.045213 0.664447 0.025496 0.022171 0.0 0.952333 0.031566 0.892469 0.0 0.075965 0.007961 0.784589 0.000589 0.206861 0.047537 0.76047 0.096746 0.095247 0.087514 0.461263 0.257017 0.194206 MOTIF Midbrain_P0_H3K4me1_67_105_0.517_4.321634e-14 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.039369 0.960631 0.0 0.0 0.612107 0.047909 0.229679 0.110305 0.043634 0.120419 0.70894 0.127007 0.150963 0.078111 0.080586 0.69034 0.010448 0.065009 0.0 0.924543 0.012815 0.046423 0.0 0.940762 0.007068 0.879875 0.0 0.113057 0.0 0.995146 0.0 0.004854 0.059944 0.908757 0.002571 0.028729 0.313613 0.300349 0.367756 0.018281 MOTIF Hindbrain_P0_H3K4me1_58_95_0.514_9.90659e-15 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 1.0 0.0 0.0 0.87428 0.047516 0.02554 0.052664 0.016687 0.00472 0.936281 0.042312 0.289397 0.163752 0.039082 0.50777 0.188205 0.06443 0.164356 0.583009 0.01459 0.0 0.010721 0.974689 0.021329 0.975975 0.0 0.002696 0.0 0.683782 0.002822 0.313395 0.045701 0.945053 0.009246 0.0 0.214214 0.395393 0.390393 0.0 MOTIF Stomach_E15.5_H3K4me1_67_78_0.511_4.167024e-17 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.973437 0.0 0.026563 0.631767 0.047758 0.228453 0.092022 0.017399 0.064042 0.901138 0.017421 0.201883 0.050417 0.076772 0.670928 0.081823 0.009809 0.362973 0.545394 0.035997 0.0 0.004214 0.959789 0.013732 0.952383 0.018298 0.015587 0.009385 0.962769 0.0 0.027847 0.049907 0.799791 0.027066 0.123236 0.034639 0.747958 0.217403 0.0 MOTIF Forebrain_P0_H3K27me3_34_130_0.506_0.001211379 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.080368 0.863186 0.056446 0.0 0.564123 0.060344 0.005797 0.369735 0.005542 0.046447 0.8926 0.055411 0.006983 0.159366 0.024862 0.808789 0.026944 0.058873 0.097057 0.817126 0.009386 0.023039 0.0 0.967575 0.031311 0.930543 0.0 0.038146 0.015265 0.690066 0.0 0.294669 0.005088 0.950947 0.017513 0.026452 0.208674 0.724401 0.045603 0.021323 MOTIF Cranio-Facial_E11.5_H3K27me3_52_116_0.504_0.02136528 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.333146 0.599859 0.066995 0.0 0.007005 0.992995 0.0 0.0 0.819584 0.076482 0.05514 0.048795 0.0 0.443882 0.540428 0.015691 0.041373 0.059856 0.063341 0.835429 0.0 0.203136 0.086584 0.71028 0.071376 0.0 0.0 0.928624 0.011968 0.977217 0.003904 0.00691 0.0 0.959232 0.0 0.040768 0.042076 0.713251 0.008861 0.235813 MOTIF Heart_E13.5_H3K27me3_58_115_0.506_0.0001656665 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.261944 0.456692 0.049841 0.231523 0.0 0.9528 0.038197 0.009003 0.624595 0.029904 0.277008 0.068493 0.0061 0.023401 0.958188 0.012311 0.135807 0.010695 0.05644 0.797057 0.145894 0.149241 0.08714 0.617726 0.01171 0.020648 0.002505 0.965137 0.00867 0.904945 0.0 0.086385 0.004943 0.947685 0.001422 0.04595 0.016603 0.877517 0.007688 0.098193 0.364229 0.087626 0.217419 0.330727 MOTIF Hindbrain_E16.5_H3K27me3_30_95_0.522_1.326809e-11 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.966937 0.033063 0.0 0.667181 0.030685 0.128397 0.173737 0.013275 0.029652 0.952271 0.004803 0.08994 0.143755 0.228408 0.537897 0.03649 0.150531 0.105919 0.707059 0.021295 0.034137 0.021927 0.92264 0.002743 0.96044 0.004469 0.032348 0.011643 0.914716 0.0 0.07364 0.039546 0.679791 0.01456 0.266103 0.08411 0.091742 0.567662 0.256487 MOTIF Heart_E14.5_H3K27me3_41_86_0.509_0.0001166978 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.0 0.954968 0.037359 0.007673 0.511436 0.054653 0.160513 0.273398 0.009266 0.061337 0.896555 0.032842 0.015344 0.076972 0.046409 0.861275 0.023838 0.33669 0.049703 0.589769 0.015656 0.024996 0.017416 0.941932 0.012168 0.914585 0.004847 0.0684 0.006386 0.956012 0.0 0.037602 0.011306 0.800287 0.014539 0.173868 0.130548 0.223863 0.368529 0.27706 0.065494 0.051017 0.821633 0.061856 MOTIF Intestine_E15.5_H3K27me3_42_94_0.514_6.399455e-05 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.003138 0.963588 0.033274 0.0 0.569407 0.143851 0.145673 0.141069 0.027203 0.153157 0.800314 0.019326 0.083215 0.092308 0.052346 0.772131 0.046184 0.132055 0.10955 0.712211 0.044663 0.03348 0.008387 0.913471 0.005401 0.949491 0.00602 0.039088 0.000645 0.960416 0.0 0.038938 0.020618 0.67486 0.022645 0.281877 0.076023 0.282453 0.326308 0.315216 MOTIF Liver_P0_H3K27me3_57_88_0.514_1.092923e-09 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.03398 0.943968 0.01567 0.006381 0.652504 0.107827 0.172902 0.066767 0.018671 0.066955 0.881404 0.03297 0.074802 0.110809 0.01661 0.797779 0.008586 0.081622 0.257113 0.652679 0.021414 0.011583 0.017412 0.949591 0.005065 0.968125 0.005225 0.021585 0.006234 0.865103 0.001542 0.127122 0.045701 0.708533 0.016491 0.229275 0.097299 0.334265 0.274543 0.293893 MOTIF Intestine_E16.5_H3K27ac_52_101_0.520_3.031257e-19 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.020875 0.917047 0.044209 0.017869 0.591101 0.20542 0.188 0.01548 0.00263 0.189455 0.75897 0.048946 0.192709 0.02876 0.077145 0.701387 0.030607 0.0 0.043517 0.925875 0.0 0.015257 0.0 0.984743 0.048314 0.931885 0.0 0.019801 0.005098 0.956833 0.0 0.038069 0.07623 0.70586 0.174055 0.043856 0.240674 0.236616 0.378652 0.144057 MOTIF Lung_E14.5_H3K27ac_63_123_0.517_2.298728e-17 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.0 0.912222 0.05192 0.035858 0.54233 0.042908 0.352962 0.0618 0.004647 0.019542 0.89556 0.080251 0.007184 0.024348 0.10772 0.860748 0.00255 0.029183 0.066478 0.901789 0.000911 0.051369 0.0 0.94772 0.01284 0.942429 0.0 0.044731 0.0 0.703782 0.0 0.296218 0.018921 0.928424 0.052656 0.0 0.264089 0.343201 0.013822 0.378888 MOTIF Intestine_E16.5_H3K27ac_44_160_0.524_1.408251e-32 letter-probability matrix: alength= 4 w= 12 nsites= 100 E= 1.0e-1 0.087 0.079 0.752 0.082 0.097 0.747 0.091 0.065 0.762 0.07 0.06 0.108 0.082 0.086 0.736 0.096 0.086 0.104 0.074 0.736 0.052 0.095 0.088 0.765 0.069 0.071 0.078 0.782 0.072 0.721 0.095 0.112 0.106 0.738 0.049 0.107 0.094 0.74 0.049 0.117 0.075 0.09 0.046 0.789 0.069 0.081 0.118 0.732 MOTIF Stomach_E14.5_H3K27ac_55_82_0.525_5.574126e-27 letter-probability matrix: alength= 4 w= 13 nsites= 100 E= 1.0e-1 0.011245 0.953211 0.013877 0.021667 0.588291 0.073736 0.275041 0.062932 0.015978 0.033889 0.872246 0.077886 0.079777 0.070945 0.123591 0.725687 0.026986 0.050926 0.295858 0.62623 0.025721 0.044202 0.002406 0.927671 0.016938 0.835308 0.01738 0.130374 0.008684 0.965518 0.008299 0.017499 0.005104 0.768304 0.199445 0.027147 0.010275 0.368936 0.042401 0.578388 0.008449 0.057428 0.46289 0.471233 0.02003 0.040215 0.0 0.939756 0.034652 0.086679 0.0 0.878668 MOTIF Intestine_P0_H3K27me3_42_115_0.510_0.0005650075 letter-probability matrix: alength= 4 w= 10 nsites= 100 E= 1.0e-1 0.007449 0.976233 0.016317 0.0 0.607023 0.175943 0.115787 0.101248 0.022161 0.023369 0.911119 0.043351 0.081812 0.110014 0.061705 0.746468 0.014955 0.203335 0.02546 0.75625 0.011784 0.028931 0.015691 0.943595 0.014943 0.841986 0.0 0.143071 0.003266 0.737278 0.00197 0.257486 0.010737 0.815766 0.028627 0.144869 0.093105 0.601332 0.104882 0.200682 MOTIF Limb_E13.5_H3K9ac_70_133_0.528_3.597541e-26 letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 1.0e-1 0.0 0.969454 0.024501 0.006045 0.508983 0.095636 0.179035 0.216346 0.002199 0.121194 0.86675 0.009857 0.149683 0.046755 0.044375 0.759188 0.012793 0.068107 0.075198 0.843902 0.004869 0.040871 0.0 0.954259 0.019466 0.900535 0.001342 0.078657 0.010293 0.791394 0.001935 0.196378 0.032115 0.732543 0.191215 0.044127 0.10731 0.333924 0.27094 0.287827 0.010442 0.477578 0.455273 0.056706