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MODEM, developed by Wei Wang et al., is used to identify target genes of a transcription factor (TF) from a single expression experiment, based on a joint probabilistic model for promoter sequence and gene expression data.
Reference:
1. Wei Wang , J. Michael Cherry, Yigal Nochomovitz, Emmitt Jolly, David Botstein and Hao Li, "Inference of combinatorial regulation in yeast transcirptional networks: A case study of sporulation", Proceeding of the National Academy of Sciences of the United States of America, 2005, 102, 6, 1998-2003.
For academic users, MODEM is free. Please download the license for the academic user, complete the name/address information at the top, sign the license agreement (download RTF file or PDF file) in DUPLICATE, and send it to:
Ha Nguyen, Ph.D.
Licensing Associate
UCSF Office of Technology Management
185 Berry Street, Suite 4603
San Francisco, CA 94107
Tel: (415) 353-4461
Fax: (415) 348-1579
Email: ngoc-ha.nguyen@ucsf.edu
http://www.otm.ucsf.edu/
Once the license is received by the technology transfer officer, We will
send you the code of MODEM.
For commercial users, please contact Dr. Ha Nguyen at the above address.
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